Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47133 * 270.00069 * 3 2 1 5 5 H 1.48497 * 109.47367 * 30.00402 * 3 2 1 6 6 H 1.48505 * 109.46782 * 150.00437 * 3 2 1 7 7 C 1.37874 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47111 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47013 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.46743 * 296.38422 * 12 11 10 14 14 C 1.81403 * 102.99944 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.38230 * 120.00208 * 90.00345 * 15 14 12 17 17 C 1.38231 * 120.00301 * 179.97438 * 16 15 14 18 18 C 1.38229 * 120.00247 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00323 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.47152 * 90.00330 * 19 18 17 21 21 C 1.38240 * 120.00041 * 0.25009 * 18 17 16 22 22 C 1.38235 * 119.99328 * 359.47608 * 21 18 17 23 23 H 0.97004 * 119.99749 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47904 * 59.99551 * 9 7 2 25 25 H 1.09003 * 109.47313 * 299.99722 * 9 7 2 26 26 H 1.09001 * 109.46773 * 59.99819 * 10 9 7 27 27 H 1.08998 * 109.46797 * 299.99657 * 10 9 7 28 28 H 1.08998 * 109.47719 * 59.99862 * 11 10 9 29 29 H 1.09003 * 109.47651 * 299.99939 * 11 10 9 30 30 H 1.09009 * 109.47056 * 60.00036 * 14 12 11 31 31 H 1.08999 * 109.47476 * 300.00107 * 14 12 11 32 32 H 1.08008 * 119.99921 * 359.97347 * 16 15 14 33 33 H 1.08001 * 120.00020 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47198 * 330.00008 * 19 18 17 35 35 H 1.09008 * 109.47393 * 209.99725 * 19 18 17 36 36 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.00422 * 179.72384 * 21 18 17 38 38 H 1.08001 * 119.99797 * 180.27319 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 16 2.6591 -6.3658 -0.0037 13 8 3.4194 -6.3384 -1.2039 14 6 1.5808 -7.8246 -0.0036 15 6 2.4247 -9.0730 -0.0046 16 6 2.8125 -9.6461 1.1921 17 6 3.5862 -10.7917 1.1912 18 6 3.9717 -11.3644 -0.0063 19 6 4.8157 -12.6129 -0.0073 20 8 3.9662 -13.7621 -0.0061 21 6 3.5878 -10.7888 -1.2031 22 6 2.8094 -9.6465 -1.2022 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8880 26 1 2.8720 -3.6051 0.8873 27 1 2.8719 -3.6035 -0.8927 28 1 0.8533 -5.0443 -0.8930 29 1 0.8539 -5.0454 0.8869 30 1 0.9513 -7.8112 -0.8934 31 1 0.9519 -7.8114 0.8866 32 1 2.5110 -9.1989 2.1278 33 1 3.8895 -11.2392 2.1261 34 1 5.4460 -12.6261 0.8818 35 1 5.4437 -12.6264 -0.8982 36 1 4.4428 -14.6035 -0.0063 37 1 3.8927 -11.2337 -2.1387 38 1 2.5058 -9.1992 -2.1371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351891402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -83.596576 kcal Electronic energy + Delta-G solvation = -18519.770314 eV Core-core repulsion = 15453.105110 eV Total energy + Delta-G solvation = -3066.665204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68928 -37.03356 -35.45205 -34.43023 -33.26259 -32.02400 -31.11588 -28.73437 -27.50203 -24.82699 -23.36409 -22.93076 -21.08028 -20.22988 -17.81397 -17.38559 -16.50369 -16.30313 -16.03543 -15.45012 -15.24456 -14.82788 -14.43006 -14.21935 -14.18608 -13.65613 -13.62421 -13.17376 -12.89673 -12.38389 -12.22804 -12.06543 -11.90392 -11.43013 -11.29335 -11.18859 -10.87304 -10.78232 -10.68323 -10.45232 -10.23081 -9.79645 -9.44912 -9.13898 -9.08470 -8.65703 -8.36214 -7.93052 -6.01110 -4.03750 0.90159 1.24737 1.81003 2.83240 3.32258 3.38229 3.41852 3.49790 3.95603 4.14846 4.45704 4.53011 4.56122 4.72884 4.82527 4.85662 5.04950 5.18378 5.29879 5.34522 5.47235 5.49992 5.52246 5.60863 5.83585 5.88335 6.18710 6.20785 6.36891 6.41230 6.50881 6.69860 6.79241 7.04040 7.21778 7.65118 7.77626 7.98279 8.40150 9.03209 9.60483 11.10109 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.058747 B = 0.002481 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.501668 B =11281.870763 C =11375.820272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.434 4.434 12 S 1.232 4.768 13 O -0.842 6.842 14 C -0.418 4.418 15 C -0.051 4.051 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.103 4.103 19 C 0.118 3.882 20 O -0.568 6.568 21 C -0.094 4.094 22 C -0.115 4.115 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.379 0.621 37 H 0.122 0.878 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -25.680 4.982 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.573 4.573 12 S 1.433 4.567 13 O -0.838 6.838 14 C -0.551 4.551 15 C -0.052 4.052 16 C -0.139 4.139 17 C -0.114 4.114 18 C -0.104 4.104 19 C 0.041 3.959 20 O -0.374 6.374 21 C -0.112 4.112 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.226 0.774 37 H 0.140 0.860 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.646 -25.076 4.954 26.680 hybrid contribution -0.698 0.561 -1.945 2.141 sum 6.948 -24.515 3.009 25.658 Atomic orbital electron populations 1.69969 1.06079 1.26628 1.50882 1.25038 0.94878 0.99330 0.95289 0.86573 0.79861 0.83328 0.78133 1.20697 1.21199 1.19758 1.21276 0.93161 0.91031 1.50596 0.92526 1.19098 0.93809 0.90924 0.97341 1.21312 0.98951 0.91842 1.01101 1.27690 1.11607 1.10860 1.07145 1.70637 0.88042 0.85393 1.12630 1.93108 1.55970 1.83789 1.50895 1.26833 1.09892 1.10168 1.08244 1.19205 0.97399 0.94941 0.93637 1.21074 0.98924 0.96251 0.97616 1.21000 0.97424 0.95615 0.97384 1.19585 1.00850 0.96245 0.93673 1.20978 0.90836 0.83648 1.00457 1.86583 1.37084 1.16042 1.97717 1.20988 0.97197 0.95522 0.97539 1.21094 0.98479 0.95878 0.97918 0.92996 0.96778 0.96229 0.92098 0.92836 0.90104 0.86823 0.88761 0.85537 0.84869 0.85714 0.92644 0.92798 0.77432 0.86036 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C -0.43 -6.87 5.92 37.16 0.22 -6.65 16 12 S 1.23 16.10 13.14 -107.50 -1.41 14.69 16 13 O -0.84 -16.32 18.14 -35.23 -0.64 -16.96 16 14 C -0.42 -4.52 6.05 36.00 0.22 -4.30 16 15 C -0.05 -0.59 5.14 -104.63 -0.54 -1.12 16 16 C -0.12 -1.15 9.70 -39.59 -0.38 -1.53 16 17 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 18 C -0.10 -1.06 5.51 -104.62 -0.58 -1.63 16 19 C 0.12 0.89 7.17 36.01 0.26 1.15 16 20 O -0.57 -4.65 13.64 -35.23 -0.48 -5.13 16 21 C -0.09 -1.07 9.70 -39.58 -0.38 -1.45 16 22 C -0.11 -1.44 9.70 -39.58 -0.38 -1.83 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.09 1.10 8.08 -51.92 -0.42 0.68 16 31 H 0.13 0.98 8.09 -51.92 -0.42 0.56 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.05 0.34 8.08 -51.92 -0.42 -0.08 16 36 H 0.38 1.16 9.12 45.56 0.42 1.57 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -38.18 340.96 -9.35 -47.53 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.03 Total: -1.79 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: -2.64 Total: -33.91 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.12 Total: -22.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 16.10 SS G_CDS: -1.41 Total: 14.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.18 -9.35 -47.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351891402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds