Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38751 * 120.05772 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94502 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05437 * 359.97234 * 5 4 3 7 7 C 1.50703 * 119.94187 * 180.02562 * 6 5 4 8 8 C 1.38239 * 120.11181 * 0.04570 * 6 5 4 9 9 C 1.38162 * 120.05707 * 359.68360 * 8 6 5 10 10 C 1.50700 * 120.03025 * 180.29546 * 9 8 6 11 11 S 1.81397 * 109.46985 * 270.27567 * 10 9 8 12 12 C 1.81405 * 103.00073 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47330 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46886 * 304.99797 * 13 12 11 15 15 O 1.42895 * 109.47158 * 64.99932 * 13 12 11 16 16 C 1.50703 * 109.47098 * 185.00006 * 13 12 11 17 17 H 1.07998 * 119.99694 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00002 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99590 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99999 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46814 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46595 * 120.00564 * 20 18 16 23 23 H 1.48492 * 109.47181 * 240.00224 * 20 18 16 24 24 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.02556 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.97304 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47165 * 89.99574 * 7 6 5 30 30 H 1.08994 * 109.47007 * 210.00230 * 7 6 5 31 31 H 1.09008 * 109.47169 * 329.99718 * 7 6 5 32 32 H 1.08005 * 119.96939 * 179.97438 * 8 6 5 33 33 H 1.09001 * 109.46908 * 30.27786 * 10 9 8 34 34 H 1.09000 * 109.47163 * 150.26993 * 10 9 8 35 35 H 1.08998 * 109.46949 * 300.00618 * 12 11 10 36 36 H 1.09005 * 109.46820 * 59.99444 * 12 11 10 37 37 H 0.96705 * 113.99906 * 60.00220 * 15 13 12 38 38 H 0.97003 * 119.99521 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3021 3.6756 -0.0005 7 6 3.9863 5.0184 -0.0005 8 6 4.0561 2.5170 -0.0014 9 6 3.4312 1.2847 0.0048 10 6 4.2537 0.0220 0.0105 11 16 4.5899 -0.4883 -1.6974 12 6 5.5737 -1.9978 -1.4862 13 6 5.9435 -2.5619 -2.8594 14 1 5.0374 -2.7122 -3.4464 15 8 6.8026 -1.6424 -3.5364 16 6 6.6544 -3.8794 -2.6864 17 1 6.8249 -4.2750 -1.6960 18 6 7.0861 -4.5803 -3.7925 19 7 6.8779 -4.0987 -4.9985 20 14 7.9678 -6.2130 -3.5780 21 1 8.0763 -6.5307 -2.1314 22 1 7.2003 -7.2837 -4.2635 23 1 9.3272 -6.1228 -4.1687 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2129 2.3203 0.0014 28 1 1.3342 4.5114 0.0000 29 1 4.1516 5.3420 1.0272 30 1 4.9440 4.9382 -0.5147 31 1 3.3581 5.7463 -0.5140 32 1 5.1345 2.5751 -0.0022 33 1 5.1959 0.2045 0.5274 34 1 3.7045 -0.7670 0.5242 35 1 6.4827 -1.7643 -0.9319 36 1 4.9918 -2.7365 -0.9349 37 1 7.6302 -1.4611 -3.0702 38 1 7.1820 -4.5916 -5.7766 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352160316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -77.083863 kcal Electronic energy + Delta-G solvation = -19191.818148 eV Core-core repulsion = 16125.435357 eV Total energy + Delta-G solvation = -3066.382791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29187 -37.71395 -35.79036 -33.29828 -32.13100 -31.64996 -29.61812 -27.95821 -27.32153 -25.88493 -25.23073 -22.12989 -21.16782 -20.50751 -18.04440 -17.11840 -16.51159 -15.91189 -15.47700 -14.96197 -14.61989 -14.43078 -14.28097 -14.12862 -13.94984 -13.78079 -13.43429 -13.29498 -12.84488 -12.47680 -12.21472 -11.97788 -11.85968 -11.53711 -11.25985 -11.15010 -10.93622 -10.89098 -10.87224 -10.68816 -10.09166 -9.47075 -9.06838 -8.77174 -8.58711 -8.21036 -7.96050 -6.92874 -6.02567 -4.22451 1.13423 1.36590 2.46043 3.25678 3.26288 3.32956 3.36036 3.39098 3.77104 4.38236 4.61766 4.70075 4.80414 4.94086 5.05909 5.17489 5.21103 5.24277 5.32121 5.40495 5.47314 5.51690 5.59586 5.77648 5.82933 5.92819 6.04753 6.10074 6.23837 6.34465 6.38918 6.54776 6.73619 6.75399 7.36194 7.67502 7.80799 8.10532 8.79623 9.38282 9.55465 11.01347 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.003551 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.452728 B = 7884.097042 C = 8533.413048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.137 3.863 4 C -0.207 4.207 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.108 4.108 8 C -0.065 4.065 9 C -0.089 4.089 10 C -0.050 4.050 11 S -0.249 6.249 12 C -0.100 4.100 13 C 0.246 3.754 14 H 0.064 0.936 15 O -0.556 6.556 16 C -0.570 4.570 17 H 0.058 0.942 18 C 0.080 3.920 19 N -0.856 5.856 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.345 0.655 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 14.472 12.598 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.090 3.910 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.127 4.127 7 C -0.164 4.164 8 C -0.085 4.085 9 C -0.090 4.090 10 C -0.197 4.197 11 S -0.019 6.019 12 C -0.249 4.249 13 C 0.187 3.813 14 H 0.082 0.918 15 O -0.358 6.358 16 C -0.610 4.610 17 H 0.076 0.924 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.188 0.812 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.186 14.703 11.016 21.510 hybrid contribution 0.941 -1.520 1.652 2.434 sum -10.245 13.183 12.668 20.958 Atomic orbital electron populations 1.23051 0.78685 1.04004 1.00987 1.86156 1.21004 1.26458 1.88203 1.18797 0.91606 0.84428 0.96163 1.21149 0.99833 0.92223 1.09392 1.20769 0.93915 0.96851 0.98584 1.19764 0.93586 0.95416 1.03885 1.20702 1.00469 0.93327 1.01931 1.20783 0.99974 0.90299 0.97461 1.18654 0.90187 0.94480 1.05712 1.22066 1.01196 0.97397 0.99057 1.87286 1.70670 1.35653 1.08264 1.24572 0.99467 0.94433 1.06404 1.19143 0.91341 0.86492 0.84296 0.91789 1.86611 1.31757 1.65839 1.51578 1.21597 1.40664 1.05586 0.93116 0.92409 1.25047 0.95130 0.97390 0.95122 1.70103 1.43910 1.37498 0.97604 0.86554 0.79489 0.83654 0.78323 1.19684 1.20798 1.20788 0.92995 0.92649 0.88198 0.85497 0.86002 0.91603 0.91476 0.91824 0.85147 0.90032 0.89543 0.91486 0.90795 0.81196 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.29 9.54 -19.42 -0.19 -4.47 16 3 C 0.14 1.93 6.66 -39.22 -0.26 1.67 16 4 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 5 C -0.08 -0.88 9.69 -39.61 -0.38 -1.27 16 6 C -0.13 -1.43 5.88 -104.60 -0.62 -2.05 16 7 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 8 C -0.07 -0.85 9.35 -39.61 -0.37 -1.22 16 9 C -0.09 -1.30 5.15 -104.47 -0.54 -1.84 16 10 C -0.05 -0.79 5.85 36.01 0.21 -0.58 16 11 S -0.25 -4.97 21.50 -107.50 -2.31 -7.29 16 12 C -0.10 -2.15 5.54 37.15 0.21 -1.95 16 13 C 0.25 6.45 2.82 -27.88 -0.08 6.37 16 14 H 0.06 1.88 8.14 -51.93 -0.42 1.45 16 15 O -0.56 -14.81 12.49 -35.23 -0.44 -15.25 16 16 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.59 12.84 55.43 0.71 -24.88 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 32 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.08 1.17 8.09 -51.92 -0.42 0.75 16 34 H 0.09 1.37 7.53 -51.92 -0.39 0.98 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 36 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 37 H 0.34 8.11 9.04 45.56 0.41 8.52 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -32.55 336.52 -8.27 -40.82 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.87 Total: 6.69 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.23 Total: -16.84 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.71 Total: -24.88 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.63 Total: -19.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.31 Total: -7.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.55 -8.27 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352160316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.265 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds