Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46977 * 2 1 4 4 N 1.46499 * 109.47197 * 119.99883 * 2 1 3 5 5 C 1.46504 * 120.00030 * 304.64508 * 4 2 1 6 6 C 1.50696 * 109.47351 * 263.47005 * 5 4 2 7 7 H 1.07996 * 120.00445 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99732 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99705 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47569 * 59.99995 * 10 8 6 12 12 H 1.48499 * 109.47273 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47414 * 299.99624 * 10 8 6 14 14 C 1.34772 * 120.00321 * 124.65183 * 4 2 1 15 15 O 1.21585 * 119.99862 * 4.38549 * 14 4 2 16 16 C 1.47501 * 120.00444 * 184.39284 * 14 4 2 17 17 C 1.36686 * 126.83302 * 174.02806 * 16 14 4 18 18 C 1.42165 * 103.79168 * 179.97438 * 17 16 14 19 19 C 1.48230 * 126.84915 * 180.02562 * 18 17 16 20 20 O 1.21418 * 119.99844 * 359.97438 * 19 18 17 21 21 O 1.34643 * 120.00221 * 179.97438 * 19 18 17 22 22 N 1.30992 * 106.30711 * 359.97438 * 18 17 16 23 23 O 1.20867 * 111.80647 * 359.73924 * 22 18 17 24 24 H 1.09000 * 109.47031 * 300.00436 * 1 2 3 25 25 H 1.09003 * 109.47056 * 59.99863 * 1 2 3 26 26 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47275 * 240.00303 * 2 1 3 28 28 H 1.09004 * 109.47052 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46990 * 299.99317 * 3 2 1 30 30 H 1.08999 * 109.47304 * 60.00369 * 3 2 1 31 31 H 1.09004 * 109.47005 * 23.47118 * 5 4 2 32 32 H 1.08994 * 109.46980 * 143.46291 * 5 4 2 33 33 H 0.96994 * 120.00564 * 180.02562 * 9 8 6 34 34 H 1.08002 * 128.10098 * 359.95702 * 17 16 14 35 35 H 0.96705 * 117.00114 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5825 -0.2521 2.5244 6 6 2.6178 0.6708 3.1136 7 1 3.5109 0.9076 2.5545 8 6 2.4248 1.2131 4.3665 9 7 1.3369 0.9252 5.0472 10 14 3.7084 2.3566 5.0971 11 1 3.8761 3.5401 4.2160 12 1 3.2666 2.8011 6.4434 13 1 5.0029 1.6382 5.2128 14 6 2.8686 -1.7291 1.0748 15 8 3.2929 -2.0426 -0.0206 16 6 3.2844 -2.4857 2.2708 17 6 4.0428 -3.6225 2.2987 18 6 4.1437 -3.9287 3.6833 19 6 4.8643 -5.0730 4.2904 20 8 5.4488 -5.8672 3.5820 21 8 4.8708 -5.2317 5.6274 22 7 3.4740 -2.9974 4.3157 23 8 2.9978 -2.1901 3.5526 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.6321 0.2749 2.4393 32 1 1.4595 -1.1206 3.1714 33 1 1.2009 1.3069 5.9284 34 1 4.4659 -4.1619 1.4642 35 1 5.3538 -5.9931 5.9768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379289754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = -74.705249 kcal Electronic energy + Delta-G solvation = -22712.537492 eV Core-core repulsion = 19099.964630 eV Total energy + Delta-G solvation = -3612.572861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.28541 -41.28729 -40.95244 -37.68700 -37.37860 -35.28985 -34.89242 -33.76722 -32.30164 -29.19862 -27.99367 -26.96882 -25.62494 -24.91821 -23.66370 -22.14011 -20.62648 -19.23925 -19.14194 -19.04953 -18.32672 -17.83431 -17.50130 -16.79618 -16.75477 -16.24684 -15.95981 -15.18554 -14.83309 -14.76034 -14.60843 -14.31722 -13.93071 -13.32988 -13.27635 -12.94975 -12.90291 -12.87471 -12.75267 -12.55936 -12.26069 -12.24173 -12.09349 -11.85986 -11.63632 -11.47325 -11.32874 -11.00695 -10.50760 -9.58819 -8.13882 -6.23644 -0.45428 -0.07526 1.38142 1.42184 1.44612 1.49081 1.52962 1.56982 1.91332 2.21432 2.45749 2.79784 3.19555 3.45365 3.60165 3.85544 4.07951 4.20610 4.28971 4.45162 4.58766 4.66924 4.88708 4.95579 5.04634 5.16200 5.20643 5.23710 5.46098 5.53500 5.66607 5.80301 6.10363 6.33560 6.56129 6.75559 6.87758 7.00109 7.45116 8.92652 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.007217 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.345535 B = 3878.773122 C = 5389.706415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 C -0.148 4.148 4 N -0.572 5.572 5 C 0.242 3.758 6 C -0.532 4.532 7 H 0.051 0.949 8 C 0.034 3.966 9 N -0.911 5.911 10 Si 0.938 3.062 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.597 3.403 15 O -0.555 6.555 16 C -0.071 4.071 17 C -0.108 4.108 18 C -0.040 4.040 19 C 0.589 3.411 20 O -0.509 6.509 21 O -0.492 6.492 22 N -0.316 5.316 23 O 0.180 5.820 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.212 0.788 35 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -6.225 -4.307 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 C -0.206 4.206 4 N -0.301 5.301 5 C 0.121 3.879 6 C -0.570 4.570 7 H 0.069 0.931 8 C -0.168 4.168 9 N -0.550 5.550 10 Si 0.764 3.236 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.382 3.618 15 O -0.437 6.437 16 C -0.136 4.136 17 C -0.130 4.130 18 C -0.195 4.195 19 C 0.430 3.570 20 O -0.397 6.397 21 O -0.306 6.306 22 N -0.009 5.009 23 O 0.092 5.908 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.229 0.771 35 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 1.187 -6.086 -3.685 7.214 hybrid contribution 1.202 -0.031 0.487 1.297 sum 2.389 -6.118 -3.198 7.305 Atomic orbital electron populations 1.22097 0.93028 1.02446 1.03465 1.21310 0.95548 0.93681 0.86885 1.22028 1.00491 0.95139 1.02907 1.48383 1.42690 1.28723 1.10298 1.19405 0.96098 0.95310 0.77051 1.21433 1.05622 1.28431 1.01537 0.93074 1.25389 0.96763 0.97540 0.97065 1.69960 1.27053 1.44807 1.13145 0.85920 0.79822 0.79885 0.77927 1.19357 1.20899 1.20759 1.16610 0.79786 0.80631 0.84766 1.90758 1.57638 1.70160 1.25141 1.24375 1.03983 0.98898 0.86345 1.22915 0.98499 0.95346 0.96272 1.22500 1.05996 0.98672 0.92351 1.18732 0.75995 0.81136 0.81099 1.90914 1.42211 1.43080 1.63456 1.84586 1.71455 1.53757 1.20824 1.74293 1.07782 0.99965 1.18894 1.85574 1.53071 1.38516 1.13655 0.92656 0.88679 0.92543 0.88671 0.94165 0.89325 0.92586 0.93705 0.94855 0.92545 0.77074 0.69190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.10 71.98 0.65 -3.45 16 2 C 0.13 4.11 3.24 44.99 0.15 4.26 16 3 C -0.15 -4.60 8.92 71.98 0.64 -3.95 16 4 N -0.57 -22.34 2.38 -805.93 -1.91 -24.26 16 5 C 0.24 10.83 4.12 85.63 0.35 11.18 16 6 C -0.53 -26.28 7.57 25.60 0.19 -26.08 16 7 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.72 5.46 84.66 0.46 2.19 16 9 N -0.91 -48.93 13.29 21.45 0.28 -48.64 16 10 Si 0.94 41.73 29.54 68.60 2.03 43.76 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.60 23.73 7.61 86.69 0.66 24.39 16 15 O -0.56 -22.68 16.26 -3.98 -0.06 -22.75 16 16 C -0.07 -2.74 6.86 24.35 0.17 -2.57 16 17 C -0.11 -3.58 10.78 22.88 0.25 -3.34 16 18 C -0.04 -1.38 7.22 42.90 0.31 -1.07 16 19 C 0.59 16.91 8.36 70.48 0.59 17.49 16 20 O -0.51 -15.44 17.73 20.10 0.36 -15.09 16 21 O -0.49 -11.07 13.44 -55.52 -0.75 -11.82 16 22 N -0.32 -12.66 12.09 -49.01 -0.59 -13.26 16 23 O 0.18 7.67 7.35 66.01 0.48 8.16 16 24 H 0.05 1.66 6.50 -2.39 -0.02 1.64 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 3.00 6.93 -2.39 -0.02 2.99 16 28 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 1.99 7.28 -2.39 -0.02 1.97 16 31 H 0.05 2.07 6.20 -2.38 -0.01 2.05 16 32 H 0.03 1.62 5.40 -2.39 -0.01 1.61 16 33 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.21 5.92 8.06 -2.91 -0.02 5.90 16 35 H 0.44 4.31 9.11 -74.05 -0.67 3.64 16 Total: -1.00 -62.02 310.80 4.73 -57.28 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.47 Total: 7.57 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 4.42 Total: 19.04 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.22 Total: -86.16 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: 0.03 Total: -41.49 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.02 4.73 -57.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379289754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.423 kcal (2) G-P(sol) polarization free energy of solvation -62.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds