Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00284 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00078 * 359.52112 * 5 4 3 7 7 C 1.50698 * 120.00186 * 180.23547 * 6 5 4 8 8 S 1.81397 * 109.47305 * 270.17399 * 7 6 5 9 9 O 1.42092 * 109.47271 * 296.38506 * 8 7 6 10 10 C 1.81406 * 103.00123 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.46915 * 180.02562 * 10 8 7 12 12 O 1.42904 * 109.46793 * 179.97438 * 11 10 8 13 13 C 1.42900 * 113.99934 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47039 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99863 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99866 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00080 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00100 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47309 * 89.99474 * 18 16 14 20 20 H 1.48501 * 109.46987 * 209.99705 * 18 16 14 21 21 H 1.48505 * 109.47041 * 329.99639 * 18 16 14 22 22 C 1.38216 * 119.99971 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.47498 * 89.99606 * 1 2 3 24 24 H 1.08999 * 109.46948 * 210.00269 * 1 2 3 25 25 H 1.09009 * 109.46815 * 329.99242 * 1 2 3 26 26 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09003 * 109.47096 * 30.17132 * 7 6 5 30 30 H 1.08998 * 109.47316 * 150.17002 * 7 6 5 31 31 H 1.08996 * 109.47058 * 300.00350 * 10 8 7 32 32 H 1.08997 * 109.46983 * 60.00115 * 10 8 7 33 33 H 1.08996 * 109.47517 * 300.00036 * 11 10 8 34 34 H 1.08997 * 109.47228 * 60.00233 * 11 10 8 35 35 H 1.09004 * 109.46739 * 300.00015 * 13 12 11 36 36 H 1.08990 * 109.47059 * 60.00143 * 13 12 11 37 37 H 0.96999 * 120.00672 * 180.02562 * 17 16 14 38 38 H 1.08002 * 119.99715 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0009 7 6 4.3340 -2.5021 -0.0015 8 16 4.6352 -3.0257 -1.7120 9 8 3.3938 -3.2763 -2.3562 10 6 5.5372 -4.5864 -1.5082 11 6 5.8716 -5.1656 -2.8843 12 8 6.5826 -6.3947 -2.7238 13 6 6.9453 -7.0216 -3.9557 14 6 7.6855 -8.3024 -3.6687 15 1 7.8611 -8.6075 -2.6477 16 6 8.1378 -9.0854 -4.7096 17 7 8.7842 -10.2029 -4.4592 18 14 7.8334 -8.5581 -6.4756 19 1 8.9652 -7.7181 -6.9435 20 1 7.7199 -9.7611 -7.3388 21 1 6.5733 -7.7758 -6.5485 22 6 2.1981 -1.1970 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2868 -2.3719 0.5117 30 1 3.7453 -3.2618 0.5127 31 1 6.4598 -4.4036 -0.9574 32 1 4.9187 -5.2941 -0.9563 33 1 4.9492 -5.3483 -3.4355 34 1 6.4902 -4.4577 -3.4359 35 1 6.0452 -7.2431 -4.5293 36 1 7.5860 -6.3519 -4.5292 37 1 9.1027 -10.7536 -5.1914 38 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385209953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -70.210649 kcal Electronic energy + Delta-G solvation = -18589.424935 eV Core-core repulsion = 15523.340188 eV Total energy + Delta-G solvation = -3066.084746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66340 -37.05163 -35.77115 -33.84137 -32.79897 -32.23527 -31.12806 -27.88902 -27.62926 -26.98223 -22.93319 -22.31536 -21.87815 -20.90485 -17.62413 -16.94932 -16.73045 -16.11815 -15.93413 -15.56281 -15.37869 -14.97502 -14.41157 -14.24567 -13.98991 -13.94083 -13.39329 -13.20661 -13.08911 -12.95676 -12.53411 -12.44223 -12.29707 -11.93156 -11.42452 -11.34044 -11.25935 -11.08120 -10.86668 -10.71126 -10.38828 -9.89176 -9.24637 -9.07414 -8.91581 -8.88268 -8.52414 -8.23640 -6.14191 -4.13877 0.81733 1.11902 1.56472 2.49609 3.23588 3.30911 3.33071 3.50304 3.65275 4.33664 4.34212 4.49099 4.61999 4.68560 4.86214 4.89864 5.03183 5.08757 5.17148 5.20524 5.31178 5.36448 5.40200 5.42073 5.54077 5.65540 5.80199 5.86511 5.95648 6.08185 6.18551 6.27404 6.34042 6.56196 6.73702 6.95520 7.55393 7.94663 8.61515 8.95998 9.44535 10.98670 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043529 B = 0.002629 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.098419 B =10648.400039 C =10779.829686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.060 4.060 7 C -0.412 4.412 8 S 1.252 4.748 9 O -0.836 6.836 10 C -0.446 4.446 11 C 0.079 3.921 12 O -0.378 6.378 13 C 0.166 3.834 14 C -0.521 4.521 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.111 4.111 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.267 0.733 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 26.124 9.376 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.141 4.141 6 C -0.061 4.061 7 C -0.546 4.546 8 S 1.451 4.549 9 O -0.831 6.831 10 C -0.583 4.583 11 C 0.001 3.999 12 O -0.297 6.297 13 C 0.091 3.909 14 C -0.559 4.559 15 H 0.100 0.900 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.190 1.190 22 C -0.131 4.131 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.077 0.923 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.600 26.273 8.626 29.615 hybrid contribution -1.302 -1.429 0.031 1.933 sum -11.903 24.844 8.656 28.877 Atomic orbital electron populations 1.20810 0.91178 1.02702 1.02565 1.19910 0.96181 0.93022 0.99213 1.21052 0.94451 0.97377 1.01433 1.21130 0.94212 0.98017 0.99811 1.21078 1.00232 0.91543 1.01222 1.19092 0.93267 0.93125 1.00601 1.26739 1.06524 1.00391 1.20983 1.70888 0.99497 0.98709 0.85811 1.93126 1.44060 1.83068 1.62893 1.27770 1.10725 1.15704 1.04123 1.21755 0.96164 0.88913 0.93108 1.87942 1.74682 1.34376 1.32703 1.20660 0.94276 0.93321 0.82644 1.20871 1.35370 1.03451 0.96215 0.89975 1.24772 0.94562 0.94647 0.98988 1.69870 1.37749 1.13216 1.32436 0.86846 0.79396 0.78692 0.84837 1.19757 1.20707 1.19036 1.20991 0.93636 0.97914 1.00512 0.90964 0.91567 0.91497 0.86096 0.85690 0.85115 0.85262 0.88521 0.85681 0.88939 0.93916 0.93134 0.97821 0.97996 0.92298 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 5 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 6 C -0.06 -0.59 5.14 -104.63 -0.54 -1.12 16 7 C -0.41 -3.60 6.05 36.00 0.22 -3.38 16 8 S 1.25 13.28 13.14 -107.50 -1.41 11.87 16 9 O -0.84 -14.12 18.14 -35.23 -0.64 -14.76 16 10 C -0.45 -5.95 6.29 37.16 0.23 -5.71 16 11 C 0.08 1.41 5.95 37.16 0.22 1.63 16 12 O -0.38 -8.95 10.33 -35.23 -0.36 -9.32 16 13 C 0.17 4.30 4.76 36.01 0.17 4.47 16 14 C -0.52 -15.68 9.99 -34.44 -0.34 -16.02 16 15 H 0.08 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -27.70 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.11 -1.23 9.36 -39.58 -0.37 -1.60 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 26 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 29 H 0.13 0.72 8.09 -51.92 -0.42 0.30 16 30 H 0.10 0.92 8.09 -51.92 -0.42 0.50 16 31 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 36 H 0.00 0.06 7.57 -51.93 -0.39 -0.34 16 37 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -38.04 338.55 -8.98 -47.01 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.84 Total: -4.17 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -1.93 Total: -25.63 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.00 Total: -24.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 13.28 SS G_CDS: -1.41 Total: 11.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.04 -8.98 -47.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.197 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds