Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99626 * 2 1 4 4 H 1.48503 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47096 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47180 * 59.99959 * 3 2 1 7 7 C 1.37873 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99843 * 175.51125 * 7 2 1 9 9 C 1.50693 * 120.00291 * 355.78496 * 7 2 1 10 10 C 1.53003 * 115.54999 * 35.31741 * 9 7 2 11 11 N 1.46498 * 109.47040 * 54.23429 * 10 9 7 12 12 C 1.34776 * 120.00246 * 184.99562 * 11 10 9 13 13 O 1.21538 * 119.99621 * 5.06574 * 12 11 10 14 14 C 1.47998 * 120.00343 * 185.06253 * 12 11 10 15 15 C 1.39994 * 120.92725 * 4.88253 * 14 12 11 16 16 C 1.37925 * 119.09730 * 179.76977 * 15 14 12 17 17 N 1.31936 * 121.01323 * 0.51599 * 16 15 14 18 18 C 1.31858 * 122.05902 * 359.73473 * 17 16 15 19 19 F 1.35105 * 119.60940 * 179.97438 * 18 17 16 20 20 C 1.38881 * 120.78610 * 359.97438 * 18 17 16 21 21 F 1.35099 * 120.55327 * 180.02562 * 20 18 17 22 22 C 1.53001 * 117.49935 * 249.65048 * 9 7 2 23 23 C 1.52999 * 117.50085 * 180.98979 * 9 7 2 24 24 H 0.96999 * 120.00497 * 4.99856 * 1 2 3 25 25 H 1.09001 * 109.47171 * 174.23552 * 10 9 7 26 26 H 1.09001 * 109.47142 * 294.23452 * 10 9 7 27 27 H 0.97002 * 120.00154 * 5.00068 * 11 10 9 28 28 H 1.08003 * 120.44987 * 359.97438 * 15 14 12 29 29 H 1.07998 * 119.49529 * 180.22611 * 16 15 14 30 30 H 1.09000 * 117.49936 * 359.97438 * 22 9 7 31 31 H 1.09008 * 117.49845 * 145.02088 * 22 9 7 32 32 H 1.09004 * 117.49687 * 214.98221 * 23 9 7 33 33 H 1.08998 * 117.49750 * 359.97002 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0821 -1.1955 -0.0727 9 6 1.2542 -2.4973 0.0970 10 6 -0.0993 -2.5338 -0.6154 11 7 0.0750 -2.1392 -2.0154 12 6 -1.0007 -2.0007 -2.8155 13 8 -2.1196 -2.1127 -2.3542 14 6 -0.8196 -1.7121 -4.2557 15 6 0.4576 -1.6793 -4.8279 16 6 0.5824 -1.4113 -6.1751 17 7 -0.4791 -1.1773 -6.9228 18 6 -1.7011 -1.1924 -6.4277 19 9 -2.7531 -0.9453 -7.2386 20 6 -1.9197 -1.4593 -5.0824 21 9 -3.1738 -1.4741 -4.5801 22 6 1.3916 -3.2972 1.3940 23 6 2.0775 -3.7868 0.1161 24 1 -0.4851 0.8368 -0.0732 25 1 -0.5064 -3.5439 -0.5706 26 1 -0.7862 -1.8432 -0.1261 27 1 0.9646 -1.9776 -2.3667 28 1 1.3332 -1.8647 -4.2233 29 1 1.5644 -1.3881 -6.6239 30 1 2.0251 -2.8810 2.1773 31 1 0.5178 -3.8498 1.7395 32 1 1.6547 -4.6612 -0.3787 33 1 3.1618 -3.6924 0.0583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404760635.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -52.513252 kcal Electronic energy + Delta-G solvation = -21916.836633 eV Core-core repulsion = 18194.138573 eV Total energy + Delta-G solvation = -3722.698060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.52729 -48.58541 -40.34900 -38.64365 -36.77896 -33.52277 -32.59099 -32.22774 -30.77031 -26.69129 -25.65572 -24.35465 -23.60556 -21.38538 -20.37788 -19.45406 -18.42727 -17.96349 -17.46452 -16.74050 -16.70014 -15.93652 -15.13494 -15.11729 -14.91705 -14.61521 -14.45377 -14.26202 -13.89620 -13.40036 -13.20768 -12.97875 -12.71307 -12.43769 -11.89173 -11.60060 -11.18017 -10.81820 -10.61354 -10.38682 -10.34199 -9.99670 -9.86135 -9.34978 -9.09291 -9.05321 -8.97626 -8.42006 -8.07562 -6.10766 -4.31554 0.40728 0.53589 2.95080 3.00063 3.13090 3.24891 3.25888 3.57713 3.75977 3.91609 4.20162 4.35278 4.43194 4.66393 4.90440 5.11656 5.35664 5.46809 5.52889 5.63793 5.89716 6.17958 6.29042 6.40354 6.49176 6.57255 6.77869 6.94576 7.14726 7.23762 7.35203 7.48431 7.84555 8.17309 8.26616 8.69998 8.84492 9.33008 10.78440 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.005508 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.971020 B = 5082.522761 C = 5524.570882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.163 3.837 11 N -0.664 5.664 12 C 0.543 3.457 13 O -0.531 6.531 14 C -0.083 4.083 15 C -0.123 4.123 16 C 0.119 3.881 17 N -0.479 5.479 18 C 0.273 3.727 19 F -0.101 7.101 20 C 0.082 3.918 21 F -0.095 7.095 22 C -0.197 4.197 23 C -0.212 4.212 24 H 0.264 0.736 25 H 0.023 0.977 26 H 0.122 0.878 27 H 0.398 0.602 28 H 0.162 0.838 29 H 0.181 0.819 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -3.177 -9.844 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.032 3.968 10 C 0.040 3.960 11 N -0.310 5.310 12 C 0.326 3.674 13 O -0.409 6.409 14 C -0.094 4.094 15 C -0.144 4.144 16 C -0.037 4.037 17 N -0.194 5.194 18 C 0.118 3.882 19 F -0.080 7.080 20 C 0.057 3.943 21 F -0.073 7.073 22 C -0.235 4.235 23 C -0.249 4.249 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.139 0.861 27 H 0.233 0.767 28 H 0.180 0.820 29 H 0.198 0.802 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.168 -2.957 -10.274 10.754 hybrid contribution 0.430 0.890 0.648 1.182 sum 1.598 -2.067 -9.625 9.973 Atomic orbital electron populations 1.69843 1.05696 1.26849 1.47839 1.25023 0.94854 0.99186 0.94065 0.86516 0.80057 0.83468 0.77907 1.19660 1.20950 1.20779 1.20535 0.92822 0.88411 1.51810 0.91908 1.19243 0.92716 0.90106 0.94722 1.21205 0.98671 0.96988 0.79110 1.45511 1.07868 1.65702 1.11954 1.17586 0.85981 0.79801 0.84023 1.90803 1.23809 1.51134 1.75125 1.20928 0.92320 0.99670 0.96530 1.22514 0.97189 0.98095 0.96565 1.22548 0.96404 0.94687 0.90048 1.66941 0.97425 1.14487 1.40514 1.18020 0.84352 1.01365 0.84486 1.91665 1.52449 1.91285 1.72635 1.18431 0.81637 1.03552 0.90659 1.91647 1.35554 1.92987 1.87135 1.22946 1.01726 1.06380 0.92486 1.22973 0.98497 0.99831 1.03593 0.92550 0.95839 0.86066 0.76651 0.82048 0.80181 0.90109 0.91373 0.91284 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.14 10.11 55.43 0.56 -21.58 16 2 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -11.79 8.43 -34.45 -0.29 -12.08 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.72 2.04 -155.66 -0.32 0.40 16 10 C 0.16 3.58 4.62 -4.04 -0.02 3.56 16 11 N -0.66 -12.98 4.97 -61.20 -0.30 -13.29 16 12 C 0.54 10.84 7.78 -12.26 -0.10 10.74 16 13 O -0.53 -12.59 15.47 5.33 0.08 -12.51 16 14 C -0.08 -1.33 5.91 -104.61 -0.62 -1.95 16 15 C -0.12 -1.46 9.59 -39.04 -0.37 -1.84 16 16 C 0.12 1.25 11.16 -17.62 -0.20 1.05 16 17 N -0.48 -6.37 10.34 -13.59 -0.14 -6.51 16 18 C 0.27 4.04 8.42 -17.30 -0.15 3.90 16 19 F -0.10 -1.49 17.21 2.25 0.04 -1.46 16 20 C 0.08 1.34 7.34 -38.72 -0.28 1.06 16 21 F -0.10 -1.76 15.64 2.25 0.04 -1.73 16 22 C -0.20 -4.02 9.96 -26.69 -0.27 -4.29 16 23 C -0.21 -4.02 9.92 -26.69 -0.26 -4.29 16 24 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 25 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.12 3.12 5.89 -51.93 -0.31 2.81 16 27 H 0.40 6.98 6.31 -40.82 -0.26 6.72 16 28 H 0.16 1.55 6.60 -52.48 -0.35 1.20 16 29 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 298.76 15.07 4.50 4.50 Total: -1.00 -28.26 298.76 -6.20 -34.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.99 Total: 5.93 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.97 Total: -2.03 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.12 Total: -41.38 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.26 -6.20 -34.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404760635.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.051 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds