Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48504 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46933 * 299.99537 * 3 2 1 6 6 H 1.48497 * 109.46968 * 59.99775 * 3 2 1 7 7 C 1.37884 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47226 * 295.00438 * 12 11 10 14 14 C 1.53006 * 109.46929 * 299.99729 * 13 12 11 15 15 C 1.53001 * 109.46981 * 300.00054 * 14 13 12 16 16 C 1.52998 * 109.47107 * 180.02562 * 15 14 13 17 17 F 1.39903 * 109.46723 * 299.99768 * 16 15 14 18 18 F 1.39897 * 109.47263 * 59.99896 * 16 15 14 19 19 F 1.39906 * 109.46897 * 179.97438 * 16 15 14 20 20 C 1.53001 * 109.47347 * 59.99796 * 15 14 13 21 21 C 1.52992 * 109.47321 * 174.99967 * 12 11 10 22 22 H 0.96999 * 119.99860 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46755 * 59.99870 * 9 7 2 24 24 H 1.08998 * 109.46859 * 299.99636 * 9 7 2 25 25 H 1.09001 * 109.47190 * 299.99732 * 11 10 9 26 26 H 1.09004 * 109.47089 * 59.99865 * 11 10 9 27 27 H 1.09002 * 109.46415 * 55.00291 * 12 11 10 28 28 H 1.09000 * 109.47227 * 59.99294 * 13 12 11 29 29 H 1.09000 * 109.47229 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47136 * 179.97438 * 14 13 12 31 31 H 1.09000 * 109.47301 * 59.99878 * 14 13 12 32 32 H 1.09000 * 109.46959 * 300.00033 * 15 14 13 33 33 H 1.08990 * 109.47263 * 179.97438 * 20 15 14 34 34 H 1.09004 * 109.46683 * 59.99723 * 20 15 14 35 35 H 1.09004 * 109.47459 * 180.02562 * 21 12 11 36 36 H 1.08998 * 109.47273 * 300.00189 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8779 0.0005 11 6 1.3514 -5.3366 0.0013 12 6 2.2082 -6.6043 0.0008 13 6 2.9981 -6.6855 -1.3071 14 6 2.0262 -6.7263 -2.4881 15 6 1.1213 -7.9536 -2.3617 16 6 0.1499 -7.9948 -3.5430 17 9 -0.6336 -6.8357 -3.5430 18 9 0.8724 -8.0693 -4.7386 19 9 -0.6772 -9.1173 -3.4277 20 6 0.3315 -7.8725 -1.0538 21 6 1.3034 -7.8315 0.1271 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 0.7226 -5.3232 0.8915 26 1 0.7219 -5.3236 -0.8885 27 1 2.9006 -6.5752 0.8422 28 1 3.6427 -5.8111 -1.3971 29 1 3.6088 -7.5883 -1.3073 30 1 2.5888 -6.7837 -3.4199 31 1 1.4157 -5.8233 -2.4877 32 1 1.7317 -8.8566 -2.3621 33 1 -0.3134 -8.7465 -0.9640 34 1 -0.2789 -6.9693 -1.0535 35 1 1.9138 -8.7346 0.1272 36 1 0.7407 -7.7737 1.0589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = -196.108247 kcal Electronic energy + Delta-G solvation = -20594.304681 eV Core-core repulsion = 16980.903865 eV Total energy + Delta-G solvation = -3613.400816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.16947 -47.67104 -47.60865 -39.19471 -33.13718 -32.90837 -30.97239 -28.54986 -27.53326 -25.16279 -23.02272 -22.85760 -21.73430 -19.16809 -18.31352 -18.12736 -17.61022 -16.43369 -15.93539 -15.30464 -14.88390 -14.60777 -14.54582 -14.14246 -14.06179 -13.83030 -13.79215 -13.70101 -13.55131 -13.09030 -12.88495 -12.42620 -12.34670 -12.20881 -11.92419 -11.69980 -11.37952 -11.18070 -10.89154 -10.66018 -10.44931 -10.37403 -10.23585 -9.80688 -9.47887 -8.80096 -8.60752 -6.64367 -6.18223 -4.22131 2.67754 2.71265 3.25563 3.32807 3.39062 3.69774 3.88044 3.91079 3.96540 4.36528 4.57617 4.61780 4.79033 4.98500 5.08079 5.11751 5.19059 5.21110 5.36723 5.41121 5.61227 5.72225 5.79873 5.87356 5.91934 5.99117 6.15102 6.22395 6.37974 6.44002 7.11908 7.13829 7.76602 8.03358 8.80158 9.40958 10.93214 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.004050 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.740563 B = 6912.629273 C = 7393.079064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.090 3.910 10 S -0.309 6.309 11 C -0.089 4.089 12 C -0.072 4.072 13 C -0.109 4.109 14 C -0.121 4.121 15 C -0.128 4.128 16 C 0.451 3.549 17 F -0.179 7.179 18 F -0.186 7.186 19 F -0.188 7.188 20 C -0.122 4.122 21 C -0.105 4.105 22 H 0.264 0.736 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -18.887 -3.780 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C -0.056 4.056 10 S -0.082 6.082 11 C -0.237 4.237 12 C -0.091 4.091 13 C -0.146 4.146 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.397 3.603 17 F -0.161 7.161 18 F -0.167 7.167 19 F -0.170 7.170 20 C -0.160 4.160 21 C -0.144 4.144 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.222 -18.730 -3.810 19.243 hybrid contribution -1.307 0.875 -0.274 1.597 sum 0.915 -17.855 -4.084 18.339 Atomic orbital electron populations 1.69966 1.06153 1.27175 1.49880 1.24973 0.94952 0.99285 0.94720 0.86314 0.80102 0.82638 0.77718 1.19420 1.20750 1.20763 1.20737 0.93471 0.88806 1.51966 0.91453 1.21026 0.93679 0.91034 0.99897 1.86483 1.21503 1.02288 1.97968 1.23444 1.00420 0.95795 1.04082 1.20940 0.96742 0.92597 0.98801 1.21536 0.97391 1.02882 0.92823 1.21664 0.97918 0.96245 1.00029 1.22528 0.96285 1.03854 0.92126 1.20760 0.81292 0.73371 0.84921 1.93200 1.76494 1.49680 1.96713 1.93166 1.77591 1.96024 1.49938 1.93158 1.74531 1.53157 1.96111 1.21666 0.98182 1.03668 0.92471 1.21527 0.97359 0.97977 0.97535 0.92595 0.94771 0.94823 0.91122 0.90562 0.90023 0.89438 0.91976 0.90728 0.89755 0.87094 0.90852 0.90135 0.91393 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.42 9.13 -34.44 -0.31 -14.74 16 8 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 9 C 0.09 2.35 5.70 36.01 0.21 2.55 16 10 S -0.31 -6.46 20.47 -107.50 -2.20 -8.66 16 11 C -0.09 -1.41 4.68 37.16 0.17 -1.23 16 12 C -0.07 -0.86 2.66 -90.62 -0.24 -1.11 16 13 C -0.11 -1.25 5.28 -26.73 -0.14 -1.39 16 14 C -0.12 -1.39 4.69 -26.73 -0.13 -1.51 16 15 C -0.13 -1.27 2.16 -90.62 -0.20 -1.46 16 16 C 0.45 5.15 2.69 37.16 0.10 5.25 16 17 F -0.18 -2.41 16.28 2.25 0.04 -2.37 16 18 F -0.19 -2.22 16.80 2.25 0.04 -2.19 16 19 F -0.19 -2.14 16.80 2.25 0.04 -2.10 16 20 C -0.12 -1.20 4.69 -26.73 -0.13 -1.32 16 21 C -0.10 -0.99 5.45 -26.73 -0.15 -1.14 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 24 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 26 H 0.08 1.21 4.82 -51.92 -0.25 0.96 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 31 H 0.08 1.16 5.98 -51.93 -0.31 0.85 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 34 H 0.08 0.91 6.21 -51.93 -0.32 0.59 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -29.16 307.97 -7.62 -36.79 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.99 Total: -2.71 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.91 Total: -14.39 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -2.20 Total: -8.66 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.16 -7.62 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.319 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds