Wall clock time and date at job start Tue Mar 31 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99908 * 2 1 4 4 H 1.08000 * 120.00423 * 202.06328 * 3 2 1 5 5 C 1.38813 * 119.99770 * 22.06027 * 3 2 1 6 6 N 1.31623 * 119.99827 * 11.25281 * 5 3 2 7 7 Si 1.86797 * 120.00098 * 191.25492 * 5 3 2 8 8 H 1.48498 * 109.47605 * 90.00107 * 7 5 3 9 9 H 1.48502 * 109.47192 * 209.99998 * 7 5 3 10 10 H 1.48499 * 109.47122 * 329.99983 * 7 5 3 11 11 C 1.46503 * 120.00211 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46711 * 269.99216 * 11 2 1 13 13 C 1.38289 * 119.87918 * 259.72590 * 12 11 2 14 14 C 1.37954 * 120.21357 * 179.76679 * 13 12 11 15 15 C 1.39668 * 119.95596 * 0.51058 * 14 13 12 16 16 C 1.43205 * 120.11976 * 179.72243 * 15 14 13 17 17 N 7.46581 * 104.61332 * 116.69065 * 2 1 3 18 18 C 1.39538 * 119.75448 * 359.74559 * 15 14 13 19 19 C 1.38481 * 119.78674 * 359.97438 * 18 15 14 20 20 O 1.35904 * 119.97950 * 179.97438 * 19 18 15 21 21 C 1.42905 * 117.00294 * 0.02746 * 20 19 18 22 22 F 1.39903 * 109.46572 * 299.99678 * 21 20 19 23 23 F 1.39901 * 109.47212 * 59.99266 * 21 20 19 24 24 H 1.08997 * 109.47090 * 274.64180 * 1 2 3 25 25 H 1.08998 * 109.47668 * 34.64824 * 1 2 3 26 26 H 1.09003 * 109.46693 * 154.65010 * 1 2 3 27 27 H 0.96999 * 119.99798 * 179.97438 * 6 5 3 28 28 H 1.08995 * 109.47372 * 29.99593 * 11 2 1 29 29 H 1.08996 * 109.46765 * 149.99772 * 11 2 1 30 30 H 1.08000 * 119.88940 * 359.97438 * 13 12 11 31 31 H 1.07994 * 120.02098 * 180.24944 * 14 13 12 32 32 H 1.08001 * 120.10395 * 180.02562 * 18 15 14 33 33 H 1.08995 * 109.47440 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2203 -0.3513 5 6 1.5318 2.3441 0.4515 6 7 0.3784 2.2718 1.0817 7 14 2.3370 4.0050 0.1648 8 1 1.8758 4.5614 -1.1325 9 1 1.9627 4.9327 1.2623 10 1 3.8127 3.8414 0.1366 11 6 2.1976 -1.2687 -0.0006 12 6 2.4489 -1.7042 1.4201 13 6 3.6863 -1.4879 1.9983 14 6 3.9224 -1.8794 3.2998 15 6 2.9126 -2.5060 4.0337 16 6 3.1558 -2.9192 5.3831 17 7 3.3486 -3.2450 6.4545 18 6 1.6663 -2.7282 3.4470 19 6 1.4388 -2.3257 2.1416 20 8 0.2265 -2.5407 1.5661 21 6 -0.7662 -3.1863 2.3662 22 9 -0.3044 -4.4490 2.7530 23 9 -1.0220 -2.4144 3.5046 24 1 -0.3633 0.0832 1.0243 25 1 -0.3634 0.8454 -0.5842 26 1 -0.3633 -0.9288 -0.4400 27 1 -0.0531 3.0810 1.3975 28 1 1.6085 -2.0282 -0.5146 29 1 3.1499 -1.1381 -0.5144 30 1 4.4694 -1.0079 1.4301 31 1 4.8887 -1.7053 3.7496 32 1 0.8813 -3.2119 4.0094 33 1 -1.6837 -3.2959 1.7882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437435254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:22 Heat of formation + Delta-G solvation = -62.213521 kcal Electronic energy + Delta-G solvation = -22310.490973 eV Core-core repulsion = 18587.372278 eV Total energy + Delta-G solvation = -3723.118695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.22010 -47.20141 -39.90539 -37.52752 -36.27793 -35.39010 -32.23158 -30.49474 -30.04918 -26.53018 -25.99504 -25.82541 -22.87323 -22.24514 -20.68412 -19.59897 -18.10783 -17.76273 -17.17340 -16.79739 -15.74397 -15.26912 -14.84329 -14.75127 -14.41128 -13.92763 -13.58006 -13.56417 -13.50009 -13.41622 -13.11889 -13.04160 -12.94708 -12.63868 -12.22039 -12.03650 -11.41995 -11.34268 -11.18693 -10.93006 -10.75191 -10.66652 -10.30356 -10.06098 -9.98369 -8.64596 -8.58923 -8.07542 -6.88640 -5.83389 -3.25157 1.03699 1.61832 2.75693 2.85630 3.16543 3.33474 3.39444 3.40863 3.59169 4.04471 4.11643 4.43019 4.44850 4.78325 5.00690 5.20361 5.27595 5.36247 5.57914 5.64896 5.82768 6.01092 6.05455 6.36805 6.51097 6.54608 6.73749 6.78675 6.97228 7.31898 7.35134 7.63915 7.68210 7.75991 8.27676 9.11981 9.73647 10.22419 11.19832 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.006430 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.970725 B = 4353.582106 C = 5158.792054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.583 5.583 3 C -0.254 4.254 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.898 5.898 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.180 3.820 12 C -0.061 4.061 13 C -0.085 4.085 14 C -0.089 4.089 15 C -0.029 4.029 16 C 0.269 3.731 17 N -0.438 5.438 18 C -0.145 4.145 19 C 0.111 3.889 20 O -0.301 6.301 21 C 0.407 3.593 22 F -0.206 7.206 23 F -0.198 7.198 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.002 0.998 27 H 0.255 0.745 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -10.618 -0.925 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.302 5.302 3 C -0.384 4.384 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.541 5.541 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.053 3.947 12 C -0.067 4.067 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.033 4.033 16 C -0.045 4.045 17 N -0.114 5.114 18 C -0.167 4.167 19 C 0.067 3.933 20 O -0.218 6.218 21 C 0.317 3.683 22 F -0.188 7.188 23 F -0.180 7.180 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.101 -10.888 0.592 10.904 hybrid contribution 0.118 1.121 0.220 1.148 sum 0.017 -9.767 0.812 9.801 Atomic orbital electron populations 1.20827 0.81801 0.95569 0.99496 1.44253 1.02308 1.00131 1.83502 1.19303 0.98337 0.84877 1.35851 0.90926 1.25112 0.97608 0.98781 0.98023 1.70081 1.17250 1.27342 1.39409 0.86219 0.78927 0.83785 0.77399 1.21350 1.21697 1.20320 1.20027 0.97139 0.88932 0.88609 1.20926 0.90520 0.93098 1.02171 1.20780 0.96478 0.98903 0.94230 1.21044 0.97979 0.97661 0.94310 1.15491 0.95322 1.05773 0.86758 1.25753 0.93113 0.92936 0.92721 1.81193 1.08375 1.10181 1.11699 1.21300 0.97390 1.03699 0.94281 1.18342 0.84854 0.98666 0.91442 1.86736 1.20553 1.74305 1.40194 1.23370 0.91999 0.72695 0.80268 1.93073 1.90615 1.42913 1.92158 1.93109 1.94267 1.75736 1.54851 0.95183 0.93782 0.97936 0.93519 0.92562 0.92175 0.84421 0.85415 0.85011 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.85 7.93 59.85 0.47 4.33 16 2 N -0.58 -13.49 2.91 -182.50 -0.53 -14.02 16 3 C -0.25 -6.46 9.68 -15.06 -0.15 -6.60 16 4 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 5 C 0.00 0.11 5.14 -17.43 -0.09 0.03 16 6 N -0.90 -25.05 10.56 55.49 0.59 -24.46 16 7 Si 0.91 20.90 29.57 -169.99 -5.03 15.87 16 8 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.18 3.34 5.50 -5.19 -0.03 3.31 16 12 C -0.06 -1.07 5.48 -104.39 -0.57 -1.65 16 13 C -0.08 -1.32 9.64 -39.67 -0.38 -1.70 16 14 C -0.09 -1.29 9.75 -39.15 -0.38 -1.68 16 15 C -0.03 -0.45 5.73 -106.95 -0.61 -1.07 16 16 C 0.27 4.34 15.33 -22.46 -0.34 3.99 16 17 N -0.44 -7.62 18.54 41.85 0.78 -6.84 16 18 C -0.15 -2.37 7.96 -39.01 -0.31 -2.68 16 19 C 0.11 1.91 6.45 -39.28 -0.25 1.66 16 20 O -0.30 -4.78 8.36 -19.44 -0.16 -4.94 16 21 C 0.41 5.03 5.98 101.05 0.60 5.63 16 22 F -0.21 -2.59 15.58 2.25 0.04 -2.56 16 23 F -0.20 -2.95 15.58 2.25 0.04 -2.91 16 24 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 25 H 0.04 1.10 7.19 -51.93 -0.37 0.73 16 26 H 0.00 0.04 7.64 -51.93 -0.40 -0.35 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 29 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 30 H 0.14 1.92 8.03 -52.49 -0.42 1.49 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.13 2.07 5.09 -52.49 -0.27 1.80 16 33 H 0.18 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -30.19 300.12 -4.84 -35.03 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.04 Total: -3.27 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.04 Total: 3.58 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.83 Total: -45.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.16 Total: -4.94 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.19 -4.84 -35.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437435254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.183 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds