Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99502 * 2 1 4 4 H 1.48503 * 109.46924 * 239.99678 * 3 2 1 5 5 H 1.48497 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 120.00151 * 3 2 1 7 7 C 1.37873 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47250 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.81409 * 102.99767 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46814 * 65.00216 * 12 11 10 14 14 C 1.52997 * 109.47317 * 60.00042 * 13 12 11 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 F 1.39895 * 109.47517 * 59.99549 * 16 15 14 18 18 F 1.39901 * 109.47059 * 180.02562 * 16 15 14 19 19 F 1.39904 * 109.46640 * 299.99483 * 16 15 14 20 20 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 20 15 14 22 22 H 0.96995 * 120.00068 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.46999 * 60.00385 * 9 7 2 24 24 H 1.08992 * 109.47408 * 300.00591 * 9 7 2 25 25 H 1.08999 * 109.47028 * 60.00210 * 10 9 7 26 26 H 1.08998 * 109.47310 * 300.00129 * 10 9 7 27 27 H 1.09000 * 109.47067 * 304.99993 * 12 11 10 28 28 H 1.08996 * 109.46929 * 299.99146 * 13 12 11 29 29 H 1.09002 * 109.46716 * 179.97438 * 13 12 11 30 30 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 31 31 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 32 32 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 33 33 H 1.08993 * 109.47662 * 180.02562 * 20 15 14 34 34 H 1.09002 * 109.47075 * 300.00932 * 20 15 14 35 35 H 1.09002 * 109.47153 * 60.00231 * 21 20 15 36 36 H 1.09001 * 109.47289 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6619 0.0027 11 16 1.3386 -5.2329 0.0034 12 6 2.6655 -6.4700 0.0054 13 6 3.4532 -6.3708 1.3132 14 6 2.5150 -6.6272 2.4944 15 6 1.9082 -8.0262 2.3693 16 6 0.9696 -8.2823 3.5501 17 9 -0.0535 -7.3283 3.5481 18 9 0.4152 -9.5617 3.4362 19 9 1.6896 -8.1915 4.7463 20 6 1.1204 -8.1254 1.0615 21 6 2.0585 -7.8690 -0.1196 22 1 -0.4850 0.8400 -0.0004 23 1 0.6243 -2.5575 -0.8881 24 1 0.6249 -2.5563 0.8918 25 1 2.8722 -3.6034 0.8927 26 1 2.8722 -3.6050 -0.8873 27 1 3.3338 -6.2874 -0.8361 28 1 3.8856 -5.3743 1.4022 29 1 4.2501 -7.1145 1.3146 30 1 1.7178 -5.8839 2.4932 31 1 3.0764 -6.5570 3.4261 32 1 2.7054 -8.7695 2.3705 33 1 0.6877 -9.1218 0.9726 34 1 0.3232 -7.3820 1.0603 35 1 2.8557 -8.6123 -0.1184 36 1 1.4972 -7.9392 -1.0514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451045111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -194.862674 kcal Electronic energy + Delta-G solvation = -20526.214349 eV Core-core repulsion = 16912.867545 eV Total energy + Delta-G solvation = -3613.346804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.12270 -47.63757 -47.54394 -38.61678 -33.70090 -32.02660 -31.25504 -30.62689 -25.87178 -25.18277 -22.93480 -22.15554 -21.12563 -20.13983 -18.32512 -18.27714 -17.61576 -16.51411 -15.67709 -15.36933 -14.76034 -14.54162 -14.45187 -14.37090 -14.01713 -14.01099 -13.75971 -13.73348 -13.50071 -13.42500 -12.81458 -12.49382 -12.35855 -12.12717 -11.67179 -11.39011 -11.27416 -11.05379 -11.00111 -10.61438 -10.49469 -10.43004 -10.15705 -9.63608 -9.33319 -9.04181 -8.41914 -7.09559 -6.05915 -4.10689 2.16939 2.72911 3.21385 3.29887 3.34958 3.37101 3.73474 3.91987 4.00456 4.41523 4.56027 4.60096 4.82464 4.97814 5.01249 5.14792 5.20628 5.29567 5.33942 5.46995 5.66612 5.79236 5.82248 5.94595 5.99510 6.06992 6.08850 6.19295 6.27604 6.74328 7.56384 7.65582 7.90186 8.27553 8.94164 9.53286 11.04801 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.003952 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.619357 B = 7083.123239 C = 7455.069198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.061 4.061 11 S -0.274 6.274 12 C -0.066 4.066 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.452 3.548 17 F -0.176 7.176 18 F -0.189 7.189 19 F -0.187 7.187 20 C -0.123 4.123 21 C -0.090 4.090 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.026 0.974 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -19.022 3.923 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.209 4.209 11 S -0.045 6.045 12 C -0.195 4.195 13 C -0.147 4.147 14 C -0.162 4.162 15 C -0.144 4.144 16 C 0.398 3.602 17 F -0.157 7.157 18 F -0.170 7.170 19 F -0.168 7.168 20 C -0.160 4.160 21 C -0.128 4.128 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.122 -19.097 3.934 19.929 hybrid contribution 1.643 1.088 0.226 1.983 sum 5.765 -18.009 4.160 19.361 Atomic orbital electron populations 1.69958 1.06068 1.26973 1.49892 1.24999 0.94869 0.99245 0.95039 0.86602 0.79548 0.82883 0.78645 1.20182 1.21154 1.20161 1.21054 0.92912 0.90345 1.51906 0.92593 1.18885 0.93386 0.89293 0.98475 1.23699 1.01386 0.92823 1.02946 1.86868 1.17054 1.03064 1.97546 1.23169 0.98799 0.97192 1.00297 1.21661 0.97298 1.02688 0.93089 1.21743 1.01015 0.94575 0.98914 1.22447 0.97466 1.02168 0.92343 1.20689 0.81012 0.73775 0.84725 1.93213 1.61625 1.64191 1.96669 1.93154 1.86953 1.40773 1.96119 1.93163 1.77799 1.95925 1.49963 1.21664 0.99014 1.03387 0.91950 1.21271 0.98794 0.94176 0.98597 0.92721 0.95635 0.95574 0.91422 0.91627 0.89607 0.90690 0.91355 0.88195 0.90865 0.87428 0.90776 0.88958 0.90936 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.98 4.98 -27.89 -0.14 0.84 16 10 C -0.06 -1.23 5.58 37.16 0.21 -1.02 16 11 S -0.27 -4.69 18.23 -107.50 -1.96 -6.65 16 12 C -0.07 -0.80 3.08 -26.73 -0.08 -0.89 16 13 C -0.11 -1.20 5.35 -26.73 -0.14 -1.34 16 14 C -0.12 -1.43 4.74 -26.73 -0.13 -1.56 16 15 C -0.12 -1.27 2.17 -90.62 -0.20 -1.46 16 16 C 0.45 5.27 2.69 37.16 0.10 5.37 16 17 F -0.18 -2.42 16.28 2.25 0.04 -2.38 16 18 F -0.19 -2.18 16.80 2.25 0.04 -2.14 16 19 F -0.19 -2.25 16.80 2.25 0.04 -2.21 16 20 C -0.12 -1.29 4.74 -26.73 -0.13 -1.41 16 21 C -0.09 -0.90 5.45 -26.73 -0.15 -1.04 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.31 7.14 -51.93 -0.37 0.94 16 26 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 27 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 28 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.42 6.57 -51.93 -0.34 1.08 16 31 H 0.07 0.78 7.80 -51.93 -0.41 0.37 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.68 7.80 -51.93 -0.41 0.27 16 34 H 0.09 1.19 6.57 -51.93 -0.34 0.85 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -29.31 309.57 -7.68 -36.98 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.15 Total: -3.00 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.06 Total: -15.70 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -1.96 Total: -6.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.31 -7.68 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451045111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.880 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds