Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35039 * 126.03622 * 2 1 4 4 C 1.35379 * 107.72592 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 126.04762 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90479 * 359.97438 * 4 3 2 7 7 C 1.50704 * 125.88872 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.47086 * 90.00299 * 7 6 4 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 6.85873 * 119.20026 * 137.76943 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 N 1.30848 * 108.21503 * 0.22807 * 6 4 3 24 24 H 1.09002 * 109.46933 * 89.99410 * 1 2 3 25 25 H 1.08994 * 109.47295 * 209.99779 * 1 2 3 26 26 H 1.09004 * 109.46744 * 330.00162 * 1 2 3 27 27 H 1.07998 * 126.13925 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47324 * 330.00118 * 7 6 4 29 29 H 1.09004 * 109.47052 * 210.00277 * 7 6 4 30 30 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 31 31 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 32 32 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 33 33 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 34 34 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2595 1.0920 0.0000 4 6 3.5448 0.6667 -0.0006 5 17 4.9556 1.6783 -0.0014 6 6 3.5349 -0.7326 -0.0003 7 6 4.7495 -1.6246 -0.0014 8 7 5.1455 -1.9143 1.3833 9 6 6.3287 -2.7841 1.4215 10 6 6.7103 -3.0624 2.8767 11 1 6.8479 -2.1180 3.4033 12 6 5.6383 -3.8344 3.5260 13 7 4.8112 -4.4331 4.0240 14 6 8.0129 -3.8638 2.9181 15 6 8.4538 -4.0324 4.3493 16 1 7.8637 -3.6105 5.1494 17 6 9.6072 -4.7307 4.6376 18 7 10.3256 -5.2448 3.6633 19 14 10.1495 -4.9463 6.4121 20 1 9.1753 -4.2785 7.3121 21 1 10.2124 -6.3937 6.7381 22 1 11.4919 -4.3385 6.5968 23 7 2.2891 -1.1328 -0.0046 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9289 2.1201 0.0004 28 1 5.5687 -1.1225 -0.5160 29 1 4.5151 -2.5571 -0.5149 30 1 4.3808 -2.3217 1.9004 31 1 7.1590 -2.2903 0.9165 32 1 6.1048 -3.7245 0.9180 33 1 8.7843 -3.3325 2.3605 34 1 7.8508 -4.8441 2.4700 35 1 11.1373 -5.7357 3.8662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563001306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = 89.231054 kcal Electronic energy + Delta-G solvation = -18660.909216 eV Core-core repulsion = 15528.447082 eV Total energy + Delta-G solvation = -3132.462134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50908 -37.46510 -36.46455 -35.42211 -33.88710 -33.12850 -31.48616 -30.26338 -28.26543 -26.32665 -24.54735 -22.51355 -21.77316 -21.54721 -20.12466 -17.48855 -16.67637 -16.50720 -15.95884 -15.50667 -14.89171 -14.80286 -14.58782 -14.28942 -13.40391 -13.26015 -13.21567 -13.05665 -12.63277 -12.48026 -12.11045 -12.02847 -11.71826 -11.60992 -11.43426 -11.20472 -11.00380 -10.71017 -10.58007 -10.49683 -10.22279 -9.73411 -9.48170 -9.18276 -8.57720 -8.42850 -8.30954 -6.06628 -4.09241 1.46350 1.79846 2.29826 2.62156 3.30952 3.39032 3.44077 3.61619 3.67400 4.16397 4.34124 4.42520 4.50229 4.69017 4.75068 4.85661 4.98879 5.03281 5.30927 5.31633 5.48187 5.53766 5.69966 5.78159 6.11816 6.19090 6.38837 6.54152 6.58556 7.06074 7.30352 7.43692 7.48128 7.57298 7.89027 8.26769 8.44877 8.95594 9.56038 11.04340 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.003276 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.547760 B = 8544.336994 C = 9082.448708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.370 5.370 3 C 0.064 3.936 4 C -0.166 4.166 5 Cl -0.034 7.034 6 C 0.099 3.901 7 C 0.137 3.863 8 N -0.682 5.682 9 C 0.068 3.932 10 C 0.007 3.993 11 H 0.112 0.888 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 N -0.279 5.279 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.182 0.818 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.341 0.659 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.025 0.975 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.115 15.070 -11.988 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.152 5.152 3 C -0.083 4.083 4 C -0.205 4.205 5 Cl -0.005 7.005 6 C -0.069 4.069 7 C 0.006 3.994 8 N -0.314 5.314 9 C -0.061 4.061 10 C -0.015 4.015 11 H 0.130 0.870 12 C -0.075 4.075 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.208 1.208 23 N -0.102 5.102 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.199 0.801 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.695 13.736 -11.213 25.050 hybrid contribution 0.829 0.053 0.611 1.031 sum -16.866 13.788 -10.602 24.228 Atomic orbital electron populations 1.21922 0.73285 1.04908 1.03600 1.48245 1.06741 1.03495 1.56767 1.22207 0.89793 0.93944 1.02367 1.20637 0.88688 0.91341 1.19813 1.98339 1.37640 1.66916 1.97648 1.22217 0.93403 0.92428 0.98805 1.20280 0.91451 0.96150 0.91543 1.60555 1.09015 1.50299 1.11534 1.22107 0.92973 0.94765 0.96298 1.19333 0.91276 0.98504 0.92355 0.87012 1.29335 0.92707 0.92779 0.92726 1.81029 1.13476 1.10928 1.10006 1.19170 0.88211 0.94984 0.98274 1.21195 1.08191 1.34754 0.92137 0.92447 1.24954 0.96509 0.95333 0.97226 1.69951 1.15724 1.36035 1.31336 0.86542 0.78576 0.77885 0.85116 1.19680 1.21052 1.20832 1.77478 1.00560 1.07718 1.24488 0.90470 0.88925 0.89163 0.80063 0.88300 0.93275 0.84095 0.88646 0.94439 0.94083 0.95714 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.85 0.69 1.22 16 2 N -0.37 -3.63 4.02 -68.11 -0.27 -3.91 16 3 C 0.06 0.59 11.48 -17.16 -0.20 0.39 16 4 C -0.17 -1.91 6.64 -39.97 -0.27 -2.17 16 5 Cl -0.03 -0.37 29.01 -51.86 -1.50 -1.88 16 6 C 0.10 1.27 6.73 -82.38 -0.55 0.72 16 7 C 0.14 1.70 6.11 -4.97 -0.03 1.67 16 8 N -0.68 -9.68 6.49 -115.05 -0.75 -10.42 16 9 C 0.07 1.02 5.12 -3.82 -0.02 1.00 16 10 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 11 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 12 C 0.24 5.01 12.98 -20.76 -0.27 4.74 16 13 N -0.48 -10.71 18.54 42.16 0.78 -9.93 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 15 C -0.52 -14.10 8.60 -34.44 -0.30 -14.39 16 16 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 N -0.28 -3.67 12.57 33.69 0.42 -3.24 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.10 1.12 8.01 -51.93 -0.42 0.71 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.34 5.26 7.80 -39.29 -0.31 4.96 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -32.50 329.23 -6.52 -39.02 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.48 Total: -1.49 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.39 Total: -4.67 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.92 Total: -52.45 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.50 -6.52 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563001306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.251 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds