Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.03304 * 2 1 4 4 C 1.35374 * 107.72573 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 126.04420 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90796 * 0.02562 * 4 3 2 7 7 C 1.50701 * 125.89484 * 179.97438 * 6 4 3 8 8 N 1.46899 * 109.47268 * 89.99501 * 7 6 4 9 9 C 1.46900 * 111.00284 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47124 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47150 * 55.00253 * 10 9 8 12 12 C 1.47192 * 109.47325 * 294.99875 * 10 9 8 13 13 N 7.25893 * 145.45044 * 101.74557 * 2 1 3 14 14 C 1.53008 * 109.46600 * 174.99960 * 10 9 8 15 15 C 1.50700 * 109.46456 * 185.00003 * 14 10 9 16 16 H 1.08001 * 120.00407 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99836 * 180.02562 * 15 14 10 18 18 N 1.31507 * 119.99985 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99785 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46812 * 90.00214 * 19 17 15 21 21 H 1.48494 * 109.47098 * 210.00134 * 19 17 15 22 22 H 1.48499 * 109.46989 * 330.00070 * 19 17 15 23 23 N 1.30847 * 108.21156 * 359.75431 * 6 4 3 24 24 H 1.09001 * 109.47060 * 90.00497 * 1 2 3 25 25 H 1.09004 * 109.47073 * 209.99986 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00068 * 1 2 3 27 27 H 1.08001 * 126.13792 * 359.94146 * 3 2 1 28 28 H 1.09000 * 109.47612 * 210.00305 * 7 6 4 29 29 H 1.09010 * 109.46931 * 329.99935 * 7 6 4 30 30 H 1.00902 * 111.00323 * 303.95769 * 8 7 6 31 31 H 1.09004 * 109.46763 * 300.00617 * 9 8 7 32 32 H 1.08997 * 109.46985 * 59.99811 * 9 8 7 33 33 H 1.08998 * 109.47386 * 304.99765 * 14 10 9 34 34 H 1.09000 * 109.47040 * 65.00503 * 14 10 9 35 35 H 0.97008 * 119.99576 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5447 0.6668 0.0006 5 17 4.9554 1.6786 0.0002 6 6 3.5349 -0.7324 0.0003 7 6 4.7496 -1.6245 0.0003 8 7 5.1442 -1.9145 1.3852 9 6 6.3282 -2.7832 1.4244 10 6 6.7076 -3.0628 2.8799 11 1 5.8475 -3.4764 3.4066 12 6 7.1235 -1.8086 3.5283 13 7 7.4438 -0.8380 4.0305 14 6 7.8622 -4.0660 2.9222 15 6 8.1547 -4.4350 4.3537 16 1 7.5749 -3.9982 5.1533 17 6 9.1626 -5.3305 4.6427 18 7 9.4182 -5.6521 5.8919 19 14 10.1650 -6.0866 3.2596 20 1 11.3451 -5.2302 2.9782 21 1 10.6212 -7.4412 3.6622 22 1 9.3256 -6.1895 2.0389 23 7 2.2892 -1.1327 0.0050 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.9288 2.1202 -0.0009 28 1 4.5157 -2.5568 -0.5138 29 1 5.5693 -1.1221 -0.5135 30 1 5.3041 -1.0625 1.9017 31 1 6.1056 -3.7236 0.9201 32 1 7.1586 -2.2886 0.9206 33 1 7.5862 -4.9614 2.3653 34 1 8.7491 -3.6182 2.4739 35 1 10.1271 -6.2824 6.0951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563001307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = 93.255731 kcal Electronic energy + Delta-G solvation = -18729.178121 eV Core-core repulsion = 15596.890510 eV Total energy + Delta-G solvation = -3132.287611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55457 -37.56427 -36.61505 -35.44655 -33.91889 -33.11848 -31.64976 -30.33441 -28.51324 -26.60328 -24.62523 -22.57793 -21.60493 -21.44276 -20.20025 -17.50945 -16.91656 -16.72359 -15.99874 -15.82921 -14.87357 -14.80126 -14.35095 -14.09745 -13.95119 -13.36108 -13.21068 -13.05702 -12.81971 -12.51499 -12.28457 -12.06838 -11.86074 -11.81879 -11.55074 -11.39693 -11.13962 -10.83684 -10.64962 -10.27354 -9.99193 -9.82624 -9.61724 -9.29747 -8.67448 -8.58692 -8.39301 -6.07553 -4.07994 1.43044 1.71698 2.23321 2.53838 3.29656 3.37231 3.37674 3.56559 3.61156 4.13288 4.25148 4.41199 4.44007 4.63948 4.73943 4.75159 4.95963 5.01427 5.22081 5.27201 5.39314 5.41817 5.62692 5.68695 6.04234 6.05589 6.19968 6.39123 6.49908 6.95860 6.98945 7.16254 7.28172 7.38075 7.66887 8.38615 8.46215 8.96369 9.52275 11.05616 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.003386 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.013808 B = 8267.102585 C = 8581.039327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.370 5.370 3 C 0.069 3.931 4 C -0.184 4.184 5 Cl -0.040 7.040 6 C 0.099 3.901 7 C 0.135 3.865 8 N -0.683 5.683 9 C 0.066 3.934 10 C 0.018 3.982 11 H 0.117 0.883 12 C 0.236 3.764 13 N -0.467 5.467 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.262 1.262 23 N -0.260 5.260 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.182 0.818 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.343 0.657 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.339 11.969 -17.227 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.152 5.152 3 C -0.078 4.078 4 C -0.223 4.223 5 Cl -0.012 7.012 6 C -0.069 4.069 7 C 0.004 3.996 8 N -0.315 5.315 9 C -0.064 4.064 10 C -0.004 4.004 11 H 0.135 0.865 12 C -0.081 4.081 13 N -0.144 5.144 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.536 5.536 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.186 1.186 23 N -0.082 5.082 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.199 0.801 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.044 11.886 -16.284 27.056 hybrid contribution 1.749 0.723 -0.883 2.088 sum -16.295 12.610 -17.167 26.818 Atomic orbital electron populations 1.21940 0.73160 1.05009 1.03654 1.48339 1.06874 1.03575 1.56431 1.22190 0.89702 0.94052 1.01878 1.20760 0.88780 0.91450 1.21277 1.98345 1.37795 1.67298 1.97760 1.22166 0.93907 0.91618 0.99253 1.20259 0.90360 0.97527 0.91413 1.60517 1.37729 1.21518 1.11718 1.22134 0.90125 0.97989 0.96183 1.19065 1.01730 0.87085 0.92528 0.86517 1.29275 0.92103 0.93760 0.92923 1.81163 1.10200 1.13569 1.09434 1.19637 0.91960 0.93434 0.99255 1.21041 1.18438 1.26184 0.90844 0.90784 1.24996 0.96736 0.96040 0.95386 1.69909 1.31542 1.34242 1.17897 0.86809 0.80902 0.78767 0.83029 1.20326 1.21294 1.18614 1.77531 1.00336 1.07102 1.23279 0.90402 0.88728 0.89204 0.80063 0.88724 0.92627 0.83877 0.88708 0.94315 0.94190 0.96208 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.47 59.85 0.69 1.17 16 2 N -0.37 -3.49 4.02 -68.12 -0.27 -3.77 16 3 C 0.07 0.62 11.47 -17.16 -0.20 0.42 16 4 C -0.18 -2.07 6.64 -39.97 -0.27 -2.34 16 5 Cl -0.04 -0.45 29.01 -51.86 -1.50 -1.95 16 6 C 0.10 1.23 6.73 -82.38 -0.55 0.67 16 7 C 0.14 1.60 6.11 -4.98 -0.03 1.57 16 8 N -0.68 -9.36 6.49 -115.05 -0.75 -10.11 16 9 C 0.07 0.92 5.12 -3.83 -0.02 0.90 16 10 C 0.02 0.32 2.42 -93.41 -0.23 0.10 16 11 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 12 C 0.24 4.83 12.99 -20.67 -0.27 4.56 16 13 N -0.47 -10.41 18.56 42.26 0.78 -9.62 16 14 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 15 C -0.53 -14.33 9.15 -34.44 -0.32 -14.65 16 16 H 0.07 2.22 7.84 -52.49 -0.41 1.80 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 19 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 N -0.26 -3.30 12.57 33.68 0.42 -2.87 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.61 8.01 -51.92 -0.42 0.20 16 30 H 0.34 5.08 7.80 -39.29 -0.31 4.77 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.81 7.20 -51.93 -0.37 0.43 16 34 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -33.79 325.66 -6.14 -39.93 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.45 Total: -0.18 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.38 Total: -5.87 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.96 Total: -52.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.79 -6.14 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563001307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.186 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds