Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.03304 * 2 1 4 4 C 1.35374 * 107.72573 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 126.04420 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90796 * 0.02562 * 4 3 2 7 7 C 1.50701 * 125.89484 * 179.97438 * 6 4 3 8 8 N 1.46899 * 109.47268 * 89.99501 * 7 6 4 9 9 C 1.46900 * 111.00284 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47124 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47150 * 55.00253 * 10 9 8 12 12 C 1.47192 * 109.47325 * 294.99875 * 10 9 8 13 13 N 7.25893 * 145.45044 * 101.74557 * 2 1 3 14 14 C 1.53008 * 109.46600 * 174.99960 * 10 9 8 15 15 C 1.50700 * 109.46456 * 185.00003 * 14 10 9 16 16 H 1.08001 * 120.00407 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99836 * 180.02562 * 15 14 10 18 18 N 1.31507 * 119.99985 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99785 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46812 * 90.00214 * 19 17 15 21 21 H 1.48494 * 109.47098 * 210.00134 * 19 17 15 22 22 H 1.48499 * 109.46989 * 330.00070 * 19 17 15 23 23 N 1.30847 * 108.21156 * 359.75431 * 6 4 3 24 24 H 1.09001 * 109.47060 * 90.00497 * 1 2 3 25 25 H 1.09004 * 109.47073 * 209.99986 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00068 * 1 2 3 27 27 H 1.08001 * 126.13792 * 359.94146 * 3 2 1 28 28 H 1.09000 * 109.47612 * 210.00305 * 7 6 4 29 29 H 1.09010 * 109.46931 * 329.99935 * 7 6 4 30 30 H 1.00902 * 111.00323 * 303.95769 * 8 7 6 31 31 H 1.09004 * 109.46763 * 300.00617 * 9 8 7 32 32 H 1.08997 * 109.46985 * 59.99811 * 9 8 7 33 33 H 1.08998 * 109.47386 * 304.99765 * 14 10 9 34 34 H 1.09000 * 109.47040 * 65.00503 * 14 10 9 35 35 H 0.97008 * 119.99576 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5447 0.6668 0.0006 5 17 4.9554 1.6786 0.0002 6 6 3.5349 -0.7324 0.0003 7 6 4.7496 -1.6245 0.0003 8 7 5.1442 -1.9145 1.3852 9 6 6.3282 -2.7832 1.4244 10 6 6.7076 -3.0628 2.8799 11 1 5.8475 -3.4764 3.4066 12 6 7.1235 -1.8086 3.5283 13 7 7.4438 -0.8380 4.0305 14 6 7.8622 -4.0660 2.9222 15 6 8.1547 -4.4350 4.3537 16 1 7.5749 -3.9982 5.1533 17 6 9.1626 -5.3305 4.6427 18 7 9.4182 -5.6521 5.8919 19 14 10.1650 -6.0866 3.2596 20 1 11.3451 -5.2302 2.9782 21 1 10.6212 -7.4412 3.6622 22 1 9.3256 -6.1895 2.0389 23 7 2.2892 -1.1327 0.0050 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.9288 2.1202 -0.0009 28 1 4.5157 -2.5568 -0.5138 29 1 5.5693 -1.1221 -0.5135 30 1 5.3041 -1.0625 1.9017 31 1 6.1056 -3.7236 0.9201 32 1 7.1586 -2.2886 0.9206 33 1 7.5862 -4.9614 2.3653 34 1 8.7491 -3.6182 2.4739 35 1 10.1271 -6.2824 6.0951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563001307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = 69.196452 kcal Electronic energy + Delta-G solvation = -18730.221410 eV Core-core repulsion = 15596.890510 eV Total energy + Delta-G solvation = -3133.330900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29391 -38.92962 -37.42792 -36.73388 -35.48510 -34.37299 -33.20387 -31.09178 -29.73709 -27.79875 -25.63074 -23.76804 -23.27096 -22.29892 -21.02760 -18.92476 -18.35445 -18.07373 -16.94181 -16.74561 -16.34442 -15.56654 -15.49553 -15.21562 -15.06866 -14.67001 -14.59152 -14.17278 -13.96637 -13.76513 -13.52310 -13.26798 -13.17952 -12.99731 -12.59138 -12.58776 -12.48841 -12.34883 -11.90644 -11.69164 -11.60759 -11.42036 -11.29860 -10.71600 -10.44065 -9.47767 -9.36177 -8.22674 -6.28296 0.71866 1.03986 1.40145 1.45710 1.46926 1.58328 1.84131 1.93817 1.95435 2.43386 3.13369 3.24420 3.25076 3.53004 3.72236 4.06651 4.08716 4.33774 4.43243 4.45749 4.51606 4.53472 4.66683 4.72667 4.86014 4.91443 4.96910 5.25711 5.28467 5.48350 5.65322 5.91360 5.96292 6.22256 6.28632 6.54225 6.75765 6.82058 7.35978 8.94426 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.003386 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.013808 B = 8267.102585 C = 8581.039327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.368 5.368 3 C 0.083 3.917 4 C -0.209 4.209 5 Cl -0.047 7.047 6 C 0.083 3.917 7 C 0.137 3.863 8 N -0.689 5.689 9 C 0.076 3.924 10 C 0.024 3.976 11 H 0.117 0.883 12 C 0.246 3.754 13 N -0.506 5.506 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.220 1.220 23 N -0.295 5.295 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.219 0.781 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.334 0.666 31 H 0.121 0.879 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 12.133 -20.199 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.149 5.149 3 C -0.066 4.066 4 C -0.248 4.248 5 Cl -0.019 7.019 6 C -0.084 4.084 7 C 0.007 3.993 8 N -0.320 5.320 9 C -0.054 4.054 10 C 0.002 3.998 11 H 0.135 0.865 12 C -0.070 4.070 13 N -0.183 5.183 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.045 0.955 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.772 3.228 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.142 1.142 23 N -0.119 5.119 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.236 0.764 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.178 12.053 -19.285 29.749 hybrid contribution 1.935 0.751 0.127 2.080 sum -17.243 12.804 -19.158 28.780 Atomic orbital electron populations 1.22340 0.70661 1.06377 1.05258 1.48745 1.08239 1.02917 1.55040 1.22765 0.88906 0.95406 0.99524 1.20942 0.89494 0.91196 1.23196 1.98335 1.38389 1.67327 1.97893 1.22252 0.94020 0.92276 0.99850 1.20276 0.90643 0.98151 0.90209 1.60499 1.37408 1.21126 1.13000 1.22057 0.90788 0.99514 0.93024 1.19120 1.00400 0.85054 0.95224 0.86500 1.29869 0.91165 0.93898 0.92042 1.81157 1.11344 1.15056 1.10755 1.19591 0.93539 0.95354 0.95571 1.21421 1.17351 1.25234 0.92916 0.95493 1.26070 0.98363 0.96894 0.98200 1.70097 1.32893 1.35791 1.20899 0.85680 0.79284 0.77161 0.80689 1.20227 1.21659 1.14223 1.77440 1.00859 1.09031 1.24572 0.88652 0.89040 0.86210 0.76441 0.87817 0.91927 0.84889 0.86129 0.93280 0.91395 0.95395 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.47 127.77 1.47 2.09 16 2 N -0.37 -6.16 4.02 -369.42 -1.48 -7.64 16 3 C 0.08 1.28 11.47 83.54 0.96 2.24 16 4 C -0.21 -4.43 6.64 22.02 0.15 -4.29 16 5 Cl -0.05 -1.02 29.01 -2.72 -0.08 -1.10 16 6 C 0.08 1.96 6.73 43.12 0.29 2.26 16 7 C 0.14 3.03 6.11 85.56 0.52 3.55 16 8 N -0.69 -17.78 6.49 -517.92 -3.36 -21.14 16 9 C 0.08 1.92 5.12 86.30 0.44 2.36 16 10 C 0.02 0.83 2.42 -12.60 -0.03 0.80 16 11 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 12 C 0.25 10.06 12.99 89.41 1.16 11.22 16 13 N -0.51 -22.83 18.56 20.04 0.37 -22.46 16 14 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 15 C -0.53 -29.11 9.15 25.60 0.23 -28.87 16 16 H 0.03 1.67 7.84 -2.91 -0.02 1.65 16 17 C 0.00 0.06 5.47 84.66 0.46 0.53 16 18 N -0.96 -59.99 13.96 21.45 0.30 -59.69 16 19 Si 0.95 41.76 27.47 68.60 1.88 43.64 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.22 -8.16 6.54 99.48 0.65 -7.51 16 23 N -0.30 -7.12 12.57 -47.34 -0.60 -7.72 16 24 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.22 1.52 8.06 -2.91 -0.02 1.49 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.28 8.01 -2.38 -0.02 1.26 16 30 H 0.33 9.63 7.80 -89.69 -0.70 8.93 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.45 7.20 -2.39 -0.02 2.43 16 34 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 35 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -75.99 325.66 3.15 -72.83 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.36 Total: 11.35 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.76 Total: -8.08 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.77 Total: -118.65 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.88 Total: 43.64 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -75.99 3.15 -72.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563001307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.029 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds