Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00309 * 2 1 4 4 H 1.48501 * 109.46994 * 269.99273 * 3 2 1 5 5 H 1.48494 * 109.47272 * 30.00098 * 3 2 1 6 6 H 1.48507 * 109.46929 * 149.99755 * 3 2 1 7 7 C 1.37887 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.53118 * 109.52273 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.28083 * 177.55840 * 10 9 7 12 12 N 1.46850 * 109.52376 * 300.82522 * 11 10 9 13 13 C 1.38704 * 110.99844 * 185.83768 * 12 11 10 14 14 N 1.33185 * 120.48865 * 298.03656 * 13 12 11 15 15 C 1.31739 * 120.88613 * 180.02562 * 14 13 12 16 16 N 1.31760 * 121.92507 * 359.97438 * 15 14 13 17 17 C 1.33153 * 120.89348 * 0.02562 * 16 15 14 18 18 N 1.38699 * 120.49172 * 179.97438 * 17 16 15 19 19 C 1.39201 * 120.49032 * 118.06365 * 13 12 11 20 20 Cl 1.73601 * 120.86816 * 359.95394 * 19 13 12 21 21 C 1.46853 * 111.19801 * 61.73785 * 12 11 10 22 22 C 1.53036 * 109.52489 * 298.25843 * 21 12 11 23 23 H 0.97005 * 119.99131 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.57338 * 59.83927 * 9 7 2 25 25 H 1.09007 * 109.50161 * 57.62154 * 10 9 7 26 26 H 1.08996 * 109.50664 * 297.50083 * 10 9 7 27 27 H 1.08998 * 109.46444 * 180.80852 * 11 10 9 28 28 H 1.09002 * 109.46014 * 60.83985 * 11 10 9 29 29 H 1.07993 * 119.03234 * 180.02562 * 15 14 13 30 30 H 0.97004 * 119.99818 * 0.02562 * 18 17 16 31 31 H 0.96997 * 120.00057 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.46002 * 58.27579 * 21 12 11 33 33 H 1.09001 * 109.45763 * 178.24526 * 21 12 11 34 34 H 1.09005 * 109.50410 * 299.24177 * 22 21 12 35 35 H 1.08993 * 109.50335 * 179.12221 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0231 -2.6374 0.0023 11 6 5.5522 -2.6315 -0.0587 12 7 5.9922 -1.9382 -1.2761 13 6 7.3678 -2.0280 -1.4297 14 7 8.1851 -1.5018 -0.5193 15 6 9.4928 -1.5821 -0.6576 16 7 10.0486 -2.1806 -1.6914 17 6 9.3011 -2.7321 -2.6454 18 7 9.8951 -3.3596 -3.7304 19 6 7.9144 -2.6689 -2.5379 20 17 6.8937 -3.3721 -3.7535 21 6 5.5528 -0.5369 -1.2774 22 6 4.0237 -0.4804 -1.2529 23 1 -0.4849 0.8402 -0.0004 24 1 3.8763 -0.6780 0.8891 25 1 3.6264 -3.1648 -0.8653 26 1 3.6972 -3.1384 0.9138 27 1 5.9191 -3.6578 -0.0725 28 1 5.9485 -2.1160 0.8162 29 1 10.1276 -1.1453 0.0990 30 1 10.8619 -3.3994 -3.7981 31 1 9.3437 -3.7593 -4.4211 32 1 5.9491 -0.0313 -0.3969 33 1 5.9201 -0.0420 -2.1765 34 1 3.6270 -0.9739 -2.1402 35 1 3.6982 0.5597 -1.2382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579429072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = 54.076443 kcal Electronic energy + Delta-G solvation = -20141.980759 eV Core-core repulsion = 17007.994207 eV Total energy + Delta-G solvation = -3133.986552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23096 -38.61195 -36.68515 -35.73164 -34.23629 -32.23764 -31.10639 -30.31604 -30.01448 -26.14672 -24.27313 -23.24179 -22.62154 -21.37010 -19.18363 -18.37798 -18.03215 -16.68835 -16.31419 -16.14555 -15.44165 -15.33745 -14.80969 -14.33586 -14.20611 -13.52546 -13.02753 -12.95205 -12.40113 -12.22040 -11.94033 -11.79042 -11.66300 -11.36073 -11.24520 -10.89557 -10.57106 -10.19954 -9.94898 -9.73172 -9.62611 -9.44457 -9.06907 -8.93300 -8.51330 -8.49182 -8.40268 -6.03772 -4.02124 0.72809 1.08008 2.08787 2.93525 3.28935 3.40116 3.41596 3.60171 3.61444 4.09388 4.43972 4.49401 4.76520 5.06903 5.26739 5.44187 5.57747 5.83212 5.86128 5.88968 6.06482 6.09338 6.31947 6.41079 6.43483 6.72097 6.77111 6.80117 6.90870 7.16023 7.29742 7.32037 7.36060 7.62667 7.80918 8.03841 8.56694 9.01029 9.59234 11.09718 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.004953 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.907315 B = 5651.238425 C = 5977.269764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.095 4.095 11 C 0.065 3.935 12 N -0.482 5.482 13 C 0.394 3.606 14 N -0.573 5.573 15 C 0.349 3.651 16 N -0.577 5.577 17 C 0.451 3.549 18 N -0.831 5.831 19 C -0.188 4.188 20 Cl -0.031 7.031 21 C 0.065 3.935 22 C -0.115 4.115 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.200 0.800 30 H 0.410 0.590 31 H 0.414 0.586 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.518 -5.672 -6.323 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.061 4.061 12 N -0.206 5.206 13 C 0.160 3.840 14 N -0.295 5.295 15 C 0.058 3.942 16 N -0.303 5.303 17 C 0.204 3.796 18 N -0.376 5.376 19 C -0.227 4.227 20 Cl -0.003 7.003 21 C -0.061 4.061 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.216 0.784 30 H 0.240 0.760 31 H 0.246 0.754 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.534 -5.462 -6.137 22.117 hybrid contribution 0.382 0.815 -0.467 1.014 sum 20.916 -4.647 -6.604 22.421 Atomic orbital electron populations 1.69902 1.06281 1.26825 1.51095 1.25016 0.94651 0.98953 0.94570 0.86899 0.79992 0.83782 0.77919 1.20568 1.22540 1.19027 1.21037 0.88723 0.94437 1.50496 0.90782 1.19201 0.96749 0.91839 0.92820 1.21517 0.90444 0.99564 1.01724 1.22234 0.98500 0.96931 0.88405 1.60156 1.03209 1.17074 1.40188 1.19978 0.91296 0.86160 0.86573 1.68814 1.05854 1.23843 1.31035 1.24580 0.88748 0.88956 0.91872 1.68098 1.39693 1.17753 1.04711 1.18177 0.86551 0.87373 0.87473 1.42234 1.10864 1.61572 1.22948 1.21764 0.90544 1.12357 0.98035 1.98354 1.67392 1.82153 1.52379 1.22229 0.98583 0.84921 1.00377 1.22057 0.90488 1.00378 1.02369 0.92747 0.95690 0.91519 0.91769 0.91906 0.93509 0.78384 0.75951 0.75427 0.93601 0.92045 0.90950 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 3 Si 0.88 21.94 24.37 -169.99 -4.14 17.79 16 4 H -0.28 -6.73 6.89 56.52 0.39 -6.34 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 7 C -0.51 -14.14 9.14 -34.44 -0.31 -14.45 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.09 -1.87 5.32 -26.65 -0.14 -2.01 16 11 C 0.07 1.13 5.27 -3.83 -0.02 1.11 16 12 N -0.48 -8.31 4.12 -173.08 -0.71 -9.02 16 13 C 0.39 6.17 5.30 -154.61 -0.82 5.35 16 14 N -0.57 -8.52 9.92 -13.85 -0.14 -8.66 16 15 C 0.35 4.21 12.28 -92.23 -1.13 3.07 16 16 N -0.58 -6.94 10.47 -13.85 -0.14 -7.09 16 17 C 0.45 5.33 7.82 -154.63 -1.21 4.13 16 18 N -0.83 -6.65 9.03 31.22 0.28 -6.36 16 19 C -0.19 -2.58 6.40 -38.85 -0.25 -2.83 16 20 Cl -0.03 -0.40 27.32 -51.86 -1.42 -1.82 16 21 C 0.06 1.20 5.28 -3.83 -0.02 1.18 16 22 C -0.12 -2.48 4.84 -26.65 -0.13 -2.61 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.03 0.60 7.19 -51.93 -0.37 0.23 16 25 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.57 16 28 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.41 2.43 8.95 -40.82 -0.37 2.07 16 31 H 0.41 2.81 7.61 -40.82 -0.31 2.50 16 32 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.05 1.20 3.39 -51.93 -0.18 1.02 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -31.36 296.79 -9.51 -40.87 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.19 Total: 1.71 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.29 Total: -5.04 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.06 Total: -58.00 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.79 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.42 Total: -1.82 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.36 -9.51 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579429072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.951 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds