Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37726 * 119.99649 * 2 1 4 4 C 1.38363 * 120.39646 * 180.02562 * 3 2 1 5 5 C 1.39812 * 120.36847 * 359.97438 * 4 3 2 6 6 C 1.48206 * 120.01556 * 180.02562 * 5 4 3 7 7 C 1.39185 * 120.20427 * 237.82281 * 6 5 4 8 8 C 1.38037 * 120.02369 * 179.97438 * 7 6 5 9 9 C 1.38529 * 120.44302 * 0.02562 * 8 7 6 10 10 C 1.37910 * 120.41102 * 359.97438 * 9 8 7 11 11 C 1.39572 * 119.95912 * 359.72687 * 10 9 8 12 12 C 1.47504 * 120.21620 * 180.29551 * 11 10 9 13 13 O 1.21505 * 120.00001 * 186.05362 * 12 11 10 14 14 O 1.34745 * 120.00258 * 6.05003 * 12 11 10 15 15 C 1.38847 * 119.97938 * 359.97438 * 5 4 3 16 16 C 1.40521 * 119.61240 * 0.25402 * 15 5 4 17 17 C 1.41427 * 120.18376 * 179.72247 * 16 15 5 18 18 H 1.08004 * 120.00118 * 209.73644 * 17 16 15 19 19 C 1.39932 * 120.00140 * 29.74047 * 17 16 15 20 20 N 1.30832 * 119.99597 * 10.10221 * 19 17 16 21 21 Si 1.86790 * 120.00346 * 190.09776 * 19 17 16 22 22 H 1.48502 * 109.47236 * 60.00045 * 21 19 17 23 23 H 1.48501 * 109.47215 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47292 * 300.00328 * 21 19 17 25 25 H 1.08995 * 109.47370 * 89.99900 * 1 2 3 26 26 H 1.09002 * 109.46761 * 210.00112 * 1 2 3 27 27 H 1.08993 * 109.47074 * 329.99485 * 1 2 3 28 28 H 1.08002 * 119.80638 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.81695 * 180.02562 * 4 3 2 30 30 H 1.07990 * 119.98671 * 359.97216 * 7 6 5 31 31 H 1.08000 * 119.77783 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.79581 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.02455 * 179.97438 * 10 9 8 34 34 H 0.96697 * 117.00189 * 179.97438 * 14 12 11 35 35 H 1.08004 * 120.19641 * 179.97438 * 15 5 4 36 36 H 0.96995 * 120.00059 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1928 0.0000 4 6 3.5792 1.2024 -0.0005 5 6 4.2944 0.0011 -0.0005 6 6 5.7764 0.0206 -0.0005 7 6 6.4849 -0.6107 -1.0187 8 6 7.8651 -0.5898 -1.0153 9 6 8.5548 0.0565 -0.0025 10 6 7.8710 0.6878 1.0151 11 6 6.4753 0.6826 1.0251 12 6 5.7382 1.3617 2.1073 13 8 4.5290 1.2625 2.1740 14 8 6.4056 2.0919 3.0221 15 6 3.6159 -1.2103 0.0005 16 6 2.2108 -1.2191 -0.0038 17 6 1.5074 -2.4461 -0.0087 18 1 0.5357 -2.5097 -0.4758 19 6 2.0705 -3.5777 0.5917 20 7 3.1473 -3.4614 1.3255 21 14 1.2846 -5.2543 0.3455 22 1 1.2694 -5.5862 -1.1018 23 1 2.0673 -6.2806 1.0800 24 1 -0.1074 -5.2292 0.8622 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6524 2.1262 0.0004 29 1 4.1097 2.1432 -0.0001 30 1 5.9547 -1.1171 -1.8115 31 1 8.4110 -1.0813 -1.8070 32 1 9.6348 0.0660 -0.0100 33 1 8.4150 1.1895 1.8018 34 1 5.8794 2.5186 3.7121 35 1 4.1649 -2.1404 0.0001 36 1 3.5379 -4.2459 1.7414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580957441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -48.898357 kcal Electronic energy + Delta-G solvation = -21485.757329 eV Core-core repulsion = 18285.152802 eV Total energy + Delta-G solvation = -3200.604527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08236 -38.35352 -37.36197 -35.58999 -33.58359 -32.44104 -31.07498 -29.73699 -29.29018 -26.06875 -24.90092 -23.98629 -22.12742 -21.08722 -20.61121 -19.20391 -17.66377 -17.25432 -16.68724 -15.62879 -15.14450 -14.99462 -14.62264 -14.29360 -13.96097 -13.68650 -13.44912 -12.89074 -12.61497 -12.47725 -12.32828 -12.20448 -11.42470 -11.36939 -11.11262 -11.08694 -11.04524 -10.96235 -10.81387 -10.60673 -10.40892 -9.64682 -9.48745 -9.35449 -9.12520 -8.75153 -8.51072 -7.20884 -6.94226 -6.58175 -4.26009 1.04222 1.59506 2.83216 3.02325 3.04458 3.11203 3.14077 3.34220 3.43026 4.01012 4.14034 4.71036 5.08722 5.18461 5.20133 5.47961 5.61402 5.74634 5.83031 6.09275 6.25069 6.25675 6.47473 6.49858 6.54081 6.64765 6.71293 6.73276 6.81649 6.90735 7.01049 7.14375 7.20129 7.33946 7.47623 7.68306 7.93850 8.08398 8.13516 8.37306 8.40436 8.67883 8.99544 9.04551 10.34587 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.006241 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.259579 B = 4485.024849 C = 5286.311337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.181 4.181 3 C -0.102 4.102 4 C -0.159 4.159 5 C -0.067 4.067 6 C 0.058 3.942 7 C -0.126 4.126 8 C -0.086 4.086 9 C -0.154 4.154 10 C -0.066 4.066 11 C -0.126 4.126 12 C 0.504 3.496 13 O -0.461 6.461 14 O -0.527 6.527 15 C -0.118 4.118 16 C 0.105 3.895 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.806 5.806 21 Si 0.907 3.093 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.406 0.594 35 H 0.121 0.879 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 5.142 -0.986 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.182 4.182 3 C -0.121 4.121 4 C -0.178 4.178 5 C -0.068 4.068 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.104 4.104 9 C -0.172 4.172 10 C -0.085 4.085 11 C -0.127 4.127 12 C 0.346 3.654 13 O -0.346 6.346 14 O -0.340 6.340 15 C -0.137 4.137 16 C 0.103 3.897 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.433 5.433 21 Si 0.732 3.268 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.264 0.736 35 H 0.139 0.861 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.549 4.764 -1.125 9.851 hybrid contribution -0.527 -0.500 0.638 0.967 sum 8.022 4.264 -0.487 9.098 Atomic orbital electron populations 1.20418 0.93710 1.00563 0.99528 1.19838 0.94300 0.93057 1.11036 1.20211 0.93512 0.95815 1.02524 1.20033 0.93335 0.94415 1.10022 1.18304 0.88360 0.94820 1.05274 1.19222 0.94364 0.90045 0.90581 1.21293 0.93713 1.00433 0.98921 1.21295 0.94263 0.97050 0.97802 1.21005 0.99756 1.00831 0.95599 1.21301 0.92655 0.96708 0.97804 1.19082 0.93126 1.04688 0.95848 1.20929 0.86109 0.76999 0.81338 1.91137 1.14215 1.57490 1.71736 1.84536 1.45863 1.63094 1.40494 1.21365 0.94494 0.94868 1.03010 1.17327 0.91332 0.91726 0.89364 1.19439 1.03941 0.93132 1.32872 0.90526 1.25846 0.94468 1.00768 0.93169 1.69795 1.18548 1.31495 1.23489 0.86395 0.79904 0.81141 0.79367 1.19037 1.20536 1.19172 0.94057 0.91979 0.94467 0.89564 0.90373 0.84966 0.85802 0.85868 0.85107 0.73612 0.86109 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.40 36.01 0.34 -1.50 16 2 C -0.18 -4.53 5.94 -103.85 -0.62 -5.15 16 3 C -0.10 -2.44 9.66 -39.72 -0.38 -2.82 16 4 C -0.16 -3.74 6.77 -38.95 -0.26 -4.01 16 5 C -0.07 -1.61 4.20 -104.99 -0.44 -2.05 16 6 C 0.06 1.18 5.41 -104.53 -0.57 0.62 16 7 C -0.13 -2.16 9.63 -39.30 -0.38 -2.54 16 8 C -0.09 -1.19 10.02 -39.55 -0.40 -1.58 16 9 C -0.15 -2.00 10.02 -39.59 -0.40 -2.40 16 10 C -0.07 -0.98 9.61 -39.20 -0.38 -1.36 16 11 C -0.13 -2.33 5.88 -104.71 -0.62 -2.95 16 12 C 0.50 9.49 7.95 34.51 0.27 9.76 16 13 O -0.46 -10.49 13.01 -19.27 -0.25 -10.74 16 14 O -0.53 -7.46 12.70 -40.61 -0.52 -7.97 16 15 C -0.12 -3.10 8.24 -38.50 -0.32 -3.42 16 16 C 0.10 2.83 5.54 -106.87 -0.59 2.23 16 17 C -0.46 -12.35 8.02 -37.73 -0.30 -12.65 16 18 H 0.08 1.96 7.02 -52.48 -0.37 1.59 16 19 C 0.07 1.87 5.26 -17.34 -0.09 1.78 16 20 N -0.81 -21.51 10.87 55.55 0.60 -20.91 16 21 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.37 6.85 -51.93 -0.36 1.01 16 27 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.08 1.74 7.73 -52.48 -0.41 1.33 16 30 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.13 1.64 7.62 -52.49 -0.40 1.24 16 34 H 0.41 3.97 9.11 45.56 0.42 4.38 16 35 H 0.12 3.29 6.27 -52.48 -0.33 2.96 16 36 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -31.25 310.34 -8.75 -40.00 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.11 Total: 8.86 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -5.12 Total: -28.03 kcal Atomic # 7 Polarization: -21.51 SS G_CDS: 0.60 Total: -20.91 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.77 Total: -18.71 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.25 -8.75 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580957441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.902 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds