Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86796 * 120.00263 * 2 1 4 4 H 1.48499 * 109.47543 * 91.87256 * 3 2 1 5 5 H 1.48504 * 109.47051 * 211.87844 * 3 2 1 6 6 H 1.48504 * 109.46964 * 331.87715 * 3 2 1 7 7 C 1.39054 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99759 * 334.78696 * 7 2 1 9 9 N 1.36874 * 119.99885 * 154.78243 * 7 2 1 10 10 C 1.34772 * 120.00030 * 127.64814 * 9 7 2 11 11 O 1.21593 * 120.00456 * 187.09545 * 10 9 7 12 12 C 1.47721 * 119.99758 * 7.09828 * 10 9 7 13 13 C 1.40097 * 120.56623 * 148.36795 * 12 10 9 14 14 C 1.38337 * 118.28118 * 179.75272 * 13 12 10 15 15 C 1.38369 * 119.31262 * 0.49741 * 14 13 12 16 16 C 1.50695 * 119.45230 * 179.73899 * 15 14 13 17 17 F 1.39895 * 109.47493 * 300.02141 * 16 15 14 18 18 F 1.39901 * 109.46947 * 60.02272 * 16 15 14 19 19 N 1.31937 * 121.09038 * 359.76439 * 15 14 13 20 20 C 1.31679 * 121.89196 * 359.97438 * 19 15 14 21 21 C 1.46503 * 119.99849 * 307.65490 * 9 7 2 22 22 C 1.52995 * 117.50058 * 1.65058 * 21 9 7 23 23 C 1.53003 * 60.00201 * 252.51208 * 22 21 9 24 24 H 0.97007 * 119.99593 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.85273 * 359.97438 * 13 12 10 26 26 H 1.08004 * 120.33970 * 180.25800 * 14 13 12 27 27 H 1.08996 * 109.47134 * 180.02562 * 16 15 14 28 28 H 1.07992 * 119.72302 * 179.97438 * 20 19 15 29 29 H 1.09002 * 115.54768 * 147.36345 * 21 9 7 30 30 H 1.09003 * 117.49803 * 0.02562 * 22 21 9 31 31 H 1.09000 * 117.49916 * 145.02334 * 22 21 9 32 32 H 1.08993 * 117.50162 * 252.50988 * 23 22 21 33 33 H 1.08997 * 117.51631 * 107.47838 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.5349 2.0235 1.3993 5 1 3.5248 1.4518 -0.7394 6 1 1.4258 2.6638 -0.6600 7 6 2.0089 -1.2043 0.0005 8 1 1.5460 -2.0948 0.3994 9 7 3.2798 -1.2610 -0.5045 10 6 4.2759 -1.7875 0.2350 11 8 5.4248 -1.7219 -0.1576 12 6 3.9719 -2.4445 1.5227 13 6 4.7533 -3.5141 1.9788 14 6 4.4295 -4.0911 3.1937 15 6 3.3486 -3.6050 3.9079 16 6 2.9896 -4.2350 5.2289 17 9 2.6949 -5.5888 5.0352 18 9 4.0682 -4.1142 6.1116 19 7 2.6268 -2.5995 3.4511 20 6 2.8976 -2.0137 2.3033 21 6 3.5573 -0.7492 -1.8488 22 6 2.3926 -0.1285 -2.6229 23 6 2.9392 -1.4980 -3.0313 24 1 -0.4850 0.8401 -0.0004 25 1 5.5889 -3.8765 1.3985 26 1 5.0121 -4.9149 3.5789 27 1 2.1191 -3.7301 5.6475 28 1 2.2832 -1.1936 1.9626 29 1 4.5459 -0.3126 -1.9908 30 1 1.4199 -0.1006 -2.1317 31 1 2.6147 0.7167 -3.2742 32 1 3.5209 -1.5537 -3.9514 33 1 2.3264 -2.3715 -2.8090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593969745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = -51.407163 kcal Electronic energy + Delta-G solvation = -22032.452386 eV Core-core repulsion = 18309.802290 eV Total energy + Delta-G solvation = -3722.650096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.98061 -46.96885 -40.21437 -38.71836 -36.48317 -33.71789 -32.35197 -32.11563 -31.33180 -26.93182 -25.44026 -23.28711 -23.09060 -21.81573 -21.10103 -19.51359 -17.88907 -17.57320 -17.33164 -17.21854 -16.58392 -15.78093 -15.32744 -14.80975 -14.39590 -14.14354 -13.99902 -13.84825 -13.35062 -13.19765 -13.13845 -13.03570 -12.83680 -12.66445 -12.28546 -11.75959 -11.38086 -11.18445 -11.05971 -10.65832 -10.23004 -10.11941 -9.70312 -9.60411 -9.57240 -9.01851 -8.82098 -8.76715 -7.70762 -6.76480 -4.48118 0.94959 1.56180 3.01922 3.12053 3.22878 3.37614 3.50727 3.90996 4.00770 4.16297 4.21220 4.42849 4.62125 4.83118 5.08955 5.09733 5.32019 5.35341 5.42582 5.58469 5.65347 5.69731 5.80035 6.04124 6.21655 6.23818 6.37863 6.54783 6.71198 6.96408 7.01919 7.22040 7.83995 7.97856 8.14796 8.65403 9.01613 9.39832 10.28426 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023066 B = 0.005586 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.618719 B = 5011.711371 C = 5543.244760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.089 3.911 3 Si 0.860 3.140 4 H -0.272 1.272 5 H -0.248 1.248 6 H -0.278 1.278 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.427 5.427 10 C 0.532 3.468 11 O -0.582 6.582 12 C -0.131 4.131 13 C -0.039 4.039 14 C -0.154 4.154 15 C 0.046 3.954 16 C 0.325 3.675 17 F -0.197 7.197 18 F -0.198 7.198 19 N -0.471 5.471 20 C 0.149 3.851 21 C 0.076 3.924 22 C -0.192 4.192 23 C -0.185 4.185 24 H 0.281 0.719 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.211 0.789 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 -3.733 3.927 6.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.123 4.123 3 Si 0.683 3.317 4 H -0.198 1.198 5 H -0.172 1.172 6 H -0.204 1.204 7 C -0.505 4.505 8 H 0.121 0.879 9 N -0.145 5.145 10 C 0.321 3.679 11 O -0.466 6.466 12 C -0.136 4.136 13 C -0.065 4.065 14 C -0.174 4.174 15 C -0.092 4.092 16 C 0.270 3.730 17 F -0.178 7.178 18 F -0.179 7.179 19 N -0.180 5.180 20 C -0.008 4.008 21 C -0.028 4.028 22 C -0.229 4.229 23 C -0.224 4.224 24 H 0.092 0.908 25 H 0.161 0.839 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.226 0.774 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.915 -3.323 4.225 6.115 hybrid contribution 0.936 0.390 -0.540 1.149 sum 3.850 -2.933 3.685 6.083 Atomic orbital electron populations 1.69839 1.06508 1.29103 1.41071 1.25491 0.94881 0.98875 0.93032 0.87076 0.82077 0.82905 0.79605 1.19806 1.17180 1.20373 1.18915 0.89463 0.97131 1.44972 0.87907 1.42892 1.07904 1.53433 1.10303 1.18143 0.84658 0.81623 0.83463 1.90661 1.20480 1.62697 1.72804 1.21146 0.97379 0.97710 0.97399 1.21631 0.97570 0.92965 0.94376 1.21643 0.98346 1.01606 0.95796 1.21563 0.94821 0.96252 0.96575 1.20131 0.88299 0.78462 0.86091 1.93004 1.93571 1.35500 1.95756 1.93001 1.59109 1.95835 1.69946 1.67503 1.28128 1.07492 1.14909 1.24740 0.92395 0.97721 0.85946 1.21710 0.96893 1.02044 0.82185 1.23519 1.00929 0.95642 1.02831 1.23209 1.04359 0.96456 0.98383 0.90841 0.83935 0.84587 0.85233 0.77360 0.86804 0.85457 0.89710 0.89661 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.38 13.93 55.50 0.77 -19.60 16 2 C 0.09 2.09 2.94 -17.45 -0.05 2.04 16 3 Si 0.86 18.63 25.83 -169.99 -4.39 14.24 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.25 -5.42 5.88 56.52 0.33 -5.09 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.38 -8.83 5.64 -15.00 -0.08 -8.91 16 8 H 0.10 2.58 6.93 -52.49 -0.36 2.22 16 9 N -0.43 -9.61 2.16 -108.83 -0.24 -9.85 16 10 C 0.53 11.99 7.42 -12.39 -0.09 11.90 16 11 O -0.58 -14.07 16.59 5.28 0.09 -13.98 16 12 C -0.13 -2.66 5.62 -104.82 -0.59 -3.25 16 13 C -0.04 -0.67 9.74 -38.85 -0.38 -1.05 16 14 C -0.15 -2.40 9.60 -39.50 -0.38 -2.78 16 15 C 0.05 0.76 6.28 -82.50 -0.52 0.24 16 16 C 0.32 4.37 5.53 36.00 0.20 4.57 16 17 F -0.20 -2.74 17.25 2.25 0.04 -2.70 16 18 F -0.20 -2.71 17.25 2.25 0.04 -2.67 16 19 N -0.47 -8.80 10.23 -9.12 -0.09 -8.90 16 20 C 0.15 3.01 9.14 -17.11 -0.16 2.85 16 21 C 0.08 1.58 4.20 -67.93 -0.29 1.30 16 22 C -0.19 -3.69 7.48 -26.73 -0.20 -3.89 16 23 C -0.19 -3.39 10.38 -26.73 -0.28 -3.67 16 24 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 25 H 0.14 2.26 8.01 -52.49 -0.42 1.84 16 26 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 27 H 0.13 1.47 8.10 -51.93 -0.42 1.04 16 28 H 0.21 4.55 4.96 -52.49 -0.26 4.28 16 29 H 0.11 2.37 7.76 -51.93 -0.40 1.97 16 30 H 0.13 2.76 5.14 -51.93 -0.27 2.49 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 288.99 15.07 4.35 4.35 Total: -1.00 -26.11 288.99 -5.27 -31.38 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.03 Total: 8.39 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.81 Total: -0.65 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.44 Total: -38.35 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.08 Total: -5.38 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.39 Total: 14.24 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.11 -5.27 -31.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593969745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.028 kcal (2) G-P(sol) polarization free energy of solvation -26.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds