Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99636 * 2 1 4 4 H 1.48498 * 109.47058 * 239.99978 * 3 2 1 5 5 H 1.48496 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46819 * 119.99817 * 3 2 1 7 7 C 1.37881 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99839 * 175.08348 * 7 2 1 9 9 C 1.50704 * 119.99579 * 355.36234 * 7 2 1 10 10 C 1.53000 * 115.54769 * 279.20614 * 9 7 2 11 11 S 1.81403 * 109.47144 * 294.73865 * 10 9 7 12 12 C 1.81397 * 102.99882 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47286 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47528 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47528 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47450 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.46671 * 60.00396 * 16 15 14 18 18 F 1.39904 * 109.47245 * 179.97438 * 16 15 14 19 19 F 1.39893 * 109.47493 * 300.00339 * 16 15 14 20 20 C 1.53003 * 117.49655 * 133.50036 * 9 7 2 21 21 C 1.52993 * 117.49741 * 64.87806 * 9 7 2 22 22 H 0.96998 * 120.00274 * 5.00175 * 1 2 3 23 23 H 1.09003 * 109.47016 * 54.73965 * 10 9 7 24 24 H 1.09003 * 109.46845 * 174.74174 * 10 9 7 25 25 H 1.08996 * 109.47529 * 300.00350 * 12 11 10 26 26 H 1.09006 * 109.47163 * 60.00007 * 12 11 10 27 27 H 1.09008 * 109.47208 * 300.00237 * 13 12 11 28 28 H 1.09001 * 109.47433 * 60.00077 * 13 12 11 29 29 H 1.09005 * 109.47417 * 300.00216 * 14 13 12 30 30 H 1.09006 * 109.47193 * 59.99839 * 14 13 12 31 31 H 1.08999 * 109.47381 * 299.99963 * 15 14 13 32 32 H 1.09001 * 109.47433 * 59.99892 * 15 14 13 33 33 H 1.09003 * 117.49776 * 359.97438 * 20 9 7 34 34 H 1.08994 * 117.49517 * 145.01637 * 20 9 7 35 35 H 1.09005 * 117.49876 * 214.97530 * 21 9 7 36 36 H 1.08998 * 117.50319 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0796 9 6 1.2548 -2.4970 0.1066 10 6 0.8310 -2.9011 1.5201 11 16 2.3065 -3.2232 2.5250 12 6 1.6108 -3.6807 4.1366 13 6 2.7470 -3.9875 5.1141 14 6 2.1602 -4.3740 6.4732 15 6 3.2965 -4.6814 7.4505 16 6 2.7097 -5.0673 8.8098 17 9 1.9009 -6.1995 8.6641 18 9 3.7487 -5.3490 9.7033 19 9 1.9430 -4.0070 9.3048 20 6 1.6422 -3.6159 -0.8624 21 6 0.3192 -2.8694 -1.0451 22 1 -0.4850 0.8368 -0.0732 23 1 0.2534 -2.0941 1.9709 24 1 0.2201 -3.8026 1.4724 25 1 1.0134 -2.8546 4.5222 26 1 0.9805 -4.5628 4.0231 27 1 3.3448 -4.8135 4.7287 28 1 3.3769 -3.1052 5.2276 29 1 1.5622 -3.5483 6.8589 30 1 1.5306 -5.2565 6.3594 31 1 3.8941 -5.5073 7.0648 32 1 3.9265 -3.7993 7.5644 33 1 2.4390 -3.4094 -1.5769 34 1 1.5952 -4.6402 -0.4929 35 1 -0.5982 -3.4028 -0.7960 36 1 0.2456 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596350419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = -161.779032 kcal Electronic energy + Delta-G solvation = -19326.136066 eV Core-core repulsion = 15714.223876 eV Total energy + Delta-G solvation = -3611.912190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.33657 -47.84294 -47.80807 -36.56440 -36.12988 -31.93766 -31.48429 -27.71853 -26.25637 -25.27378 -22.82729 -21.46459 -21.09842 -19.16829 -18.80109 -18.54843 -17.53888 -16.21806 -15.93335 -15.24344 -14.72691 -14.71323 -14.61009 -14.25296 -14.00574 -13.99018 -13.89170 -13.68479 -13.55087 -13.26567 -13.01774 -12.37934 -12.10699 -11.75038 -11.65465 -11.54203 -11.00236 -10.90674 -10.89894 -10.78236 -10.47184 -10.15481 -9.57169 -9.26626 -8.90184 -8.44406 -8.00087 -6.82147 -6.02664 -4.08899 2.33423 2.56951 3.32576 3.36627 3.40837 3.50692 3.56449 3.75914 3.80212 4.41891 4.58306 4.62050 4.98244 5.05877 5.22482 5.25802 5.32511 5.39354 5.48272 5.66901 5.79294 5.96769 6.04532 6.17717 6.20478 6.39782 6.53382 6.73828 6.81689 7.07743 7.38761 7.51296 7.89386 8.40524 8.91777 9.56657 11.05389 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.003105 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.343324 B = 9016.507116 C = 9629.574120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.485 4.485 8 H 0.061 0.939 9 C 0.055 3.945 10 C -0.024 4.024 11 S -0.250 6.250 12 C -0.102 4.102 13 C -0.096 4.096 14 C -0.121 4.121 15 C -0.165 4.165 16 C 0.450 3.550 17 F -0.185 7.185 18 F -0.188 7.188 19 F -0.184 7.184 20 C -0.205 4.205 21 C -0.148 4.148 22 H 0.260 0.740 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -9.799 14.770 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.523 4.523 8 H 0.079 0.921 9 C 0.053 3.947 10 C -0.172 4.172 11 S -0.022 6.022 12 C -0.250 4.250 13 C -0.134 4.134 14 C -0.160 4.160 15 C -0.203 4.203 16 C 0.396 3.604 17 F -0.166 7.166 18 F -0.169 7.169 19 F -0.166 7.166 20 C -0.242 4.242 21 C -0.188 4.188 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.677 -9.603 14.593 18.085 hybrid contribution -1.126 0.803 0.565 1.494 sum 3.551 -8.800 15.158 17.883 Atomic orbital electron populations 1.69973 1.05877 1.26813 1.49395 1.24954 0.94796 0.98886 0.94478 0.86687 0.79690 0.83031 0.78839 1.20287 1.21389 1.19922 1.20341 0.92746 0.88384 1.50807 0.92082 1.18430 0.98515 0.93218 0.84491 1.23050 0.94049 1.01055 0.99060 1.86848 1.18810 1.89520 1.06984 1.23304 1.00811 1.03454 0.97462 1.21211 0.97344 1.02680 0.92155 1.21641 0.96592 1.03176 0.94636 1.22924 1.01149 1.06281 0.89995 1.20709 0.76273 0.74644 0.88732 1.93183 1.74663 1.52883 1.95911 1.93185 1.58372 1.93755 1.71628 1.93187 1.76861 1.56913 1.89593 1.22979 0.99442 0.95864 1.05934 1.22585 0.91300 1.01900 1.03048 0.93010 0.90064 0.93445 0.90657 0.91074 0.90815 0.90583 0.90378 0.90489 0.87131 0.87078 0.90346 0.91465 0.92016 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 12.85 55.43 0.71 -23.88 16 2 C 0.07 1.94 5.44 -17.82 -0.10 1.84 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -13.08 8.47 -34.44 -0.29 -13.37 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.06 1.34 1.34 -155.66 -0.21 1.13 16 10 C -0.02 -0.52 5.80 37.16 0.22 -0.31 16 11 S -0.25 -4.86 21.43 -107.50 -2.30 -7.16 16 12 C -0.10 -1.45 5.94 37.15 0.22 -1.23 16 13 C -0.10 -1.05 5.22 -26.74 -0.14 -1.18 16 14 C -0.12 -1.06 4.97 -26.74 -0.13 -1.19 16 15 C -0.17 -1.19 5.26 -26.73 -0.14 -1.33 16 16 C 0.45 3.99 3.16 37.16 0.12 4.11 16 17 F -0.18 -1.82 16.80 2.25 0.04 -1.78 16 18 F -0.19 -1.78 17.32 2.25 0.04 -1.74 16 19 F -0.18 -1.86 16.80 2.25 0.04 -1.82 16 20 C -0.20 -4.46 9.96 -26.73 -0.27 -4.73 16 21 C -0.15 -3.43 9.39 -26.73 -0.25 -3.68 16 22 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 23 H 0.08 1.95 8.14 -51.92 -0.42 1.53 16 24 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 27 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.70 7.80 -51.93 -0.41 0.30 16 30 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -28.17 330.40 -7.92 -36.09 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.43 Total: -0.80 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.97 Total: -19.94 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.71 Total: -23.88 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.11 Total: -5.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.30 Total: -7.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.17 -7.92 -36.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596350419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.686 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds