Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47180 * 270.00202 * 3 2 1 5 5 H 1.48507 * 109.47195 * 30.00205 * 3 2 1 6 6 H 1.48495 * 109.47086 * 150.00106 * 3 2 1 7 7 C 1.37879 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20805 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98620 * 220.14729 * 10 9 7 12 12 C 1.34774 * 136.06062 * 207.08759 * 11 10 9 13 13 O 1.21592 * 119.99399 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00455 * 179.97438 * 12 11 10 15 15 C 1.40053 * 119.99994 * 185.31418 * 14 12 11 16 16 C 1.38865 * 120.03441 * 213.29415 * 15 14 12 17 17 C 1.38136 * 120.00107 * 179.97438 * 16 15 14 18 18 C 1.38421 * 120.06328 * 359.71743 * 17 16 15 19 19 F 1.35107 * 119.96264 * 180.27695 * 18 17 16 20 20 C 1.38670 * 120.07268 * 0.56243 * 18 17 16 21 21 F 1.35098 * 119.99826 * 179.72145 * 20 18 17 22 22 C 1.38326 * 119.99724 * 359.43723 * 20 18 17 23 23 C 1.47069 * 87.88431 * 27.34010 * 11 10 9 24 24 H 0.96999 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.28203 * 313.06000 * 9 7 2 26 26 H 1.08997 * 113.47029 * 105.35990 * 10 9 7 27 27 H 1.09002 * 113.51834 * 334.93295 * 10 9 7 28 28 H 0.97002 * 119.99681 * 5.31423 * 14 12 11 29 29 H 1.08002 * 119.99905 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.96321 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.03054 * 180.25759 * 22 20 18 32 32 H 1.09000 * 113.46736 * 87.44262 * 23 11 10 33 33 H 1.09000 * 113.46577 * 217.87737 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1487 -3.7443 -0.0005 11 7 1.2072 -4.3594 -0.9482 12 6 0.8317 -5.6139 -1.2668 13 8 1.3298 -6.5622 -0.6914 14 7 -0.0958 -5.8174 -2.2233 15 6 -0.5674 -7.1114 -2.4774 16 6 -0.9258 -7.4796 -3.7675 17 6 -1.3904 -8.7563 -4.0175 18 6 -1.4936 -9.6714 -2.9841 19 9 -1.9429 -10.9212 -3.2319 20 6 -1.1419 -9.3050 -1.6937 21 9 -1.2486 -10.1976 -0.6853 22 6 -0.6764 -8.0273 -1.4402 23 6 0.8604 -3.0033 -1.3995 24 1 -0.4850 0.8400 0.0004 25 1 0.4438 -2.5306 0.7313 26 1 2.1878 -4.2513 0.9635 27 1 3.1375 -3.5676 -0.4240 28 1 -0.4367 -5.0675 -2.7356 29 1 -0.8414 -6.7679 -4.5754 30 1 -1.6694 -9.0419 -5.0209 31 1 -0.3984 -7.7426 -0.4362 32 1 1.5091 -2.6305 -2.1921 33 1 -0.1983 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596456461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = -50.369013 kcal Electronic energy + Delta-G solvation = -20986.255586 eV Core-core repulsion = 17263.650508 eV Total energy + Delta-G solvation = -3722.605079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.47736 -48.55198 -40.52411 -38.93013 -37.30782 -34.44524 -32.80130 -30.98712 -30.06580 -28.31674 -25.26300 -25.11592 -23.61557 -22.62337 -20.89248 -19.32877 -18.40405 -17.75797 -17.44403 -16.86110 -16.65706 -16.29615 -15.97393 -15.14539 -14.97675 -14.81800 -14.60238 -14.52418 -14.05226 -13.74482 -13.39179 -12.83526 -12.71095 -12.38116 -12.31480 -11.67527 -11.57349 -11.41985 -11.06767 -10.88102 -10.45130 -10.27637 -10.03152 -9.38517 -9.24582 -9.08362 -8.68879 -8.32090 -7.91049 -6.27803 -4.33922 0.78717 0.90969 2.62333 3.09182 3.17748 3.26270 3.29119 3.55758 3.74623 4.06290 4.26005 4.30575 4.47416 4.76646 4.97541 5.02187 5.23988 5.63227 5.70889 5.77507 5.84087 5.98898 6.02743 6.10838 6.29669 6.33530 6.34761 6.46050 6.59552 6.77900 7.33013 7.45260 7.69962 8.06625 8.39872 8.70624 8.76772 9.33741 10.81843 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.003139 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.746098 B = 8918.140819 C = 9191.569649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.038 3.962 10 C 0.121 3.879 11 N -0.657 5.657 12 C 0.723 3.277 13 O -0.589 6.589 14 N -0.685 5.685 15 C 0.205 3.795 16 C -0.137 4.137 17 C -0.102 4.102 18 C 0.036 3.964 19 F -0.134 7.134 20 C 0.092 3.908 21 F -0.127 7.127 22 C -0.135 4.135 23 C 0.095 3.905 24 H 0.265 0.735 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.412 0.588 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -11.417 -8.306 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.018 3.982 10 C -0.001 4.001 11 N -0.393 5.393 12 C 0.427 3.573 13 O -0.468 6.468 14 N -0.331 5.331 15 C 0.108 3.892 16 C -0.158 4.158 17 C -0.121 4.121 18 C 0.014 3.986 19 F -0.113 7.113 20 C 0.071 3.929 21 F -0.106 7.106 22 C -0.157 4.157 23 C -0.028 4.028 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.249 0.751 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.093 0.907 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.592 -12.161 -7.838 14.907 hybrid contribution 0.133 0.906 -0.298 0.963 sum -3.459 -11.255 -8.136 14.312 Atomic orbital electron populations 1.69942 1.06099 1.27278 1.48860 1.25030 0.94879 0.99480 0.94095 0.86514 0.79937 0.82850 0.78282 1.20487 1.21094 1.19630 1.20897 0.93081 0.89423 1.52303 0.91711 1.20377 0.94814 0.91070 0.91905 1.23320 0.93800 0.92217 0.90781 1.49234 1.44808 1.03052 1.42231 1.15371 0.79510 0.82626 0.79823 1.90896 1.59523 1.40197 1.56221 1.42688 1.43376 1.07317 1.39761 1.17240 0.94764 0.85022 0.92196 1.20791 1.03461 0.96569 0.95017 1.20762 1.00413 0.92248 0.98678 1.17583 1.06313 0.81784 0.92879 1.91502 1.87097 1.37892 1.94774 1.17431 1.03474 0.88367 0.83626 1.91526 1.93857 1.66611 1.58598 1.21132 1.01219 0.91337 1.01977 1.23736 0.99691 0.76691 1.02647 0.92544 0.91155 0.92172 0.90772 0.75149 0.83927 0.83415 0.82238 0.90651 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 13.26 55.43 0.74 -22.30 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.52 -12.51 8.83 -34.44 -0.30 -12.81 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.04 0.83 3.79 -91.12 -0.35 0.48 16 10 C 0.12 2.36 8.17 -8.51 -0.07 2.29 16 11 N -0.66 -12.32 3.69 -190.86 -0.70 -13.03 16 12 C 0.72 13.27 8.53 -86.92 -0.74 12.53 16 13 O -0.59 -12.49 14.80 5.28 0.08 -12.41 16 14 N -0.68 -9.76 5.35 -14.21 -0.08 -9.83 16 15 C 0.21 2.73 6.28 -83.66 -0.53 2.21 16 16 C -0.14 -1.37 9.96 -39.39 -0.39 -1.77 16 17 C -0.10 -0.98 10.02 -39.55 -0.40 -1.38 16 18 C 0.04 0.44 7.30 -39.35 -0.29 0.15 16 19 F -0.13 -1.71 17.18 2.25 0.04 -1.67 16 20 C 0.09 1.29 7.30 -39.39 -0.29 1.00 16 21 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 22 C -0.14 -2.00 8.63 -39.34 -0.34 -2.34 16 23 C 0.09 1.80 7.88 -8.37 -0.07 1.73 16 24 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 28 H 0.41 4.86 8.54 -40.82 -0.35 4.51 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.16 2.68 6.41 -52.49 -0.34 2.34 16 32 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -27.89 302.26 -7.39 -35.28 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.18 Total: 3.32 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.85 Total: 3.71 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.04 Total: -45.16 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.89 -7.39 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.091 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds