Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47180 * 270.00202 * 3 2 1 5 5 H 1.48507 * 109.47195 * 30.00205 * 3 2 1 6 6 H 1.48495 * 109.47086 * 150.00106 * 3 2 1 7 7 C 1.37879 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20805 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98620 * 220.14729 * 10 9 7 12 12 C 1.34774 * 136.06062 * 207.08759 * 11 10 9 13 13 O 1.21592 * 119.99399 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00455 * 179.97438 * 12 11 10 15 15 C 1.40053 * 119.99994 * 185.31418 * 14 12 11 16 16 C 1.38865 * 120.03441 * 213.29415 * 15 14 12 17 17 C 1.38136 * 120.00107 * 179.97438 * 16 15 14 18 18 C 1.38421 * 120.06328 * 359.71743 * 17 16 15 19 19 F 1.35107 * 119.96264 * 180.27695 * 18 17 16 20 20 C 1.38670 * 120.07268 * 0.56243 * 18 17 16 21 21 F 1.35098 * 119.99826 * 179.72145 * 20 18 17 22 22 C 1.38326 * 119.99724 * 359.43723 * 20 18 17 23 23 C 1.47069 * 87.88431 * 27.34010 * 11 10 9 24 24 H 0.96999 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.28203 * 313.06000 * 9 7 2 26 26 H 1.08997 * 113.47029 * 105.35990 * 10 9 7 27 27 H 1.09002 * 113.51834 * 334.93295 * 10 9 7 28 28 H 0.97002 * 119.99681 * 5.31423 * 14 12 11 29 29 H 1.08002 * 119.99905 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.96321 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.03054 * 180.25759 * 22 20 18 32 32 H 1.09000 * 113.46736 * 87.44262 * 23 11 10 33 33 H 1.09000 * 113.46577 * 217.87737 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1487 -3.7443 -0.0005 11 7 1.2072 -4.3594 -0.9482 12 6 0.8317 -5.6139 -1.2668 13 8 1.3298 -6.5622 -0.6914 14 7 -0.0958 -5.8174 -2.2233 15 6 -0.5674 -7.1114 -2.4774 16 6 -0.9258 -7.4796 -3.7675 17 6 -1.3904 -8.7563 -4.0175 18 6 -1.4936 -9.6714 -2.9841 19 9 -1.9429 -10.9212 -3.2319 20 6 -1.1419 -9.3050 -1.6937 21 9 -1.2486 -10.1976 -0.6853 22 6 -0.6764 -8.0273 -1.4402 23 6 0.8604 -3.0033 -1.3995 24 1 -0.4850 0.8400 0.0004 25 1 0.4438 -2.5306 0.7313 26 1 2.1878 -4.2513 0.9635 27 1 3.1375 -3.5676 -0.4240 28 1 -0.4367 -5.0675 -2.7356 29 1 -0.8414 -6.7679 -4.5754 30 1 -1.6694 -9.0419 -5.0209 31 1 -0.3984 -7.7426 -0.4362 32 1 1.5091 -2.6305 -2.1921 33 1 -0.1983 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596456461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = -66.284987 kcal Electronic energy + Delta-G solvation = -20986.945755 eV Core-core repulsion = 17263.650508 eV Total energy + Delta-G solvation = -3723.295247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.52582 -49.59774 -41.84299 -40.21668 -38.70495 -35.70588 -34.63903 -31.97476 -31.42934 -29.64171 -26.97724 -26.67672 -24.64876 -23.72010 -22.36870 -20.77502 -19.56234 -18.99284 -18.64733 -18.46677 -17.90210 -17.35487 -17.16537 -16.70150 -16.33077 -16.07597 -16.02712 -15.58080 -15.37956 -14.97131 -14.54078 -14.17675 -14.07140 -13.74783 -13.43833 -13.24991 -13.14885 -12.77426 -12.61874 -12.48947 -12.17967 -11.64547 -11.39164 -11.06305 -10.98679 -10.52960 -10.08914 -9.70621 -9.13413 -8.15707 -6.26256 -0.20601 -0.04344 1.32334 1.48944 1.52804 1.60977 1.85940 2.41478 2.46594 2.67775 2.85182 3.15694 3.28171 3.55540 3.90224 3.94356 4.20647 4.32230 4.39000 4.47317 4.65272 4.72518 4.76177 4.82750 4.90851 4.94621 4.99208 5.08940 5.27101 5.61887 5.74602 5.83216 6.10863 6.24150 6.82766 6.93782 7.35248 7.44497 8.94068 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.044171 B = 0.003139 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.746098 B = 8918.140819 C = 9191.569649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.023 3.977 10 C 0.127 3.873 11 N -0.658 5.658 12 C 0.721 3.279 13 O -0.622 6.622 14 N -0.670 5.670 15 C 0.185 3.815 16 C -0.111 4.111 17 C -0.082 4.082 18 C 0.035 3.965 19 F -0.136 7.136 20 C 0.070 3.930 21 F -0.141 7.141 22 C -0.154 4.154 23 C 0.113 3.887 24 H 0.264 0.736 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.426 0.574 29 H 0.184 0.816 30 H 0.191 0.809 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 -11.302 -11.089 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.004 3.996 10 C 0.004 3.996 11 N -0.394 5.394 12 C 0.425 3.575 13 O -0.503 6.503 14 N -0.318 5.318 15 C 0.089 3.911 16 C -0.132 4.132 17 C -0.100 4.100 18 C 0.014 3.986 19 F -0.115 7.115 20 C 0.049 3.951 21 F -0.120 7.120 22 C -0.176 4.176 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.265 0.735 29 H 0.201 0.799 30 H 0.208 0.792 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.592 -12.059 -10.651 16.485 hybrid contribution 0.096 0.774 0.563 0.962 sum -3.496 -11.285 -10.089 15.536 Atomic orbital electron populations 1.70043 1.07342 1.27832 1.50312 1.25714 0.95525 1.02405 0.94069 0.85579 0.78666 0.79166 0.78381 1.19763 1.21553 1.19278 1.21200 0.93389 0.90374 1.51529 0.91445 1.20253 0.94648 0.91512 0.93214 1.23189 0.94089 0.91125 0.91198 1.49099 1.44826 1.03282 1.42230 1.15485 0.79960 0.81789 0.80252 1.90882 1.60872 1.40992 1.57579 1.42430 1.42253 1.08415 1.38681 1.17490 0.96019 0.84264 0.93337 1.21192 1.00543 0.97241 0.94192 1.21231 0.98110 0.91080 0.99624 1.17815 1.05968 0.82168 0.92685 1.91500 1.87094 1.38246 1.94680 1.17606 1.04973 0.88123 0.84354 1.91481 1.94131 1.66965 1.59414 1.20947 1.02858 0.92428 1.01349 1.23458 1.00211 0.76354 1.00876 0.92670 0.94233 0.92548 0.89557 0.73507 0.79889 0.79171 0.85309 0.89595 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.99 13.26 21.45 0.28 -47.70 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 39.12 29.54 68.60 2.03 41.15 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.53 -25.27 8.83 25.60 0.23 -25.05 16 8 H 0.07 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.02 1.02 3.79 -11.12 -0.04 0.98 16 10 C 0.13 4.94 8.17 83.18 0.68 5.62 16 11 N -0.66 -24.39 3.69 -876.01 -3.23 -27.62 16 12 C 0.72 26.26 8.53 179.06 1.53 27.79 16 13 O -0.62 -26.83 14.80 -4.01 -0.06 -26.89 16 14 N -0.67 -18.08 5.35 -317.14 -1.70 -19.78 16 15 C 0.19 4.62 6.28 38.11 0.24 4.86 16 16 C -0.11 -1.76 9.96 22.40 0.22 -1.53 16 17 C -0.08 -1.22 10.02 22.29 0.22 -1.00 16 18 C 0.03 0.78 7.30 22.42 0.16 0.94 16 19 F -0.14 -3.22 17.18 44.97 0.77 -2.45 16 20 C 0.07 1.97 7.30 22.39 0.16 2.13 16 21 F -0.14 -4.38 17.18 44.97 0.77 -3.61 16 22 C -0.15 -4.64 8.63 22.43 0.19 -4.44 16 23 C 0.11 4.20 7.88 83.26 0.66 4.86 16 24 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 25 H 0.04 1.98 8.11 -2.39 -0.02 1.96 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 3.15 8.10 -2.39 -0.02 3.13 16 28 H 0.43 8.97 8.54 -92.71 -0.79 8.17 16 29 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.13 4.65 6.41 -2.91 -0.02 4.63 16 32 H 0.09 3.03 8.10 -2.39 -0.02 3.01 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -61.66 302.26 3.96 -57.70 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.37 Total: 12.42 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 4.72 Total: 16.78 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -4.64 Total: -95.10 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.55 Total: -6.06 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -61.66 3.96 -57.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.582 kcal (2) G-P(sol) polarization free energy of solvation -61.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds