Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00341 * 2 1 4 4 H 1.48504 * 109.47409 * 239.99794 * 3 2 1 5 5 H 1.48497 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47169 * 120.00212 * 3 2 1 7 7 C 1.37884 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74361 * 81.26025 * 9 7 2 11 11 N 1.47933 * 85.99761 * 137.99855 * 10 9 7 12 12 C 1.34776 * 134.49723 * 155.33543 * 11 10 9 13 13 O 1.21586 * 119.99588 * 180.02562 * 12 11 10 14 14 N 1.34775 * 120.00283 * 0.02641 * 12 11 10 15 15 C 1.39937 * 119.99949 * 175.38443 * 14 12 11 16 16 C 1.38839 * 120.04307 * 214.82502 * 15 14 12 17 17 C 1.38356 * 119.95489 * 179.74365 * 16 15 14 18 18 F 1.35097 * 119.97604 * 180.26978 * 17 16 15 19 19 C 1.38465 * 120.04044 * 0.53489 * 17 16 15 20 20 C 1.38470 * 120.09166 * 359.73948 * 19 17 16 21 21 F 1.35101 * 119.97940 * 180.02562 * 20 19 17 22 22 C 1.38351 * 120.04282 * 359.97438 * 20 19 17 23 23 C 1.47577 * 91.00470 * 335.35737 * 11 10 9 24 24 H 0.97005 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.08999 * 112.94600 * 309.66068 * 9 7 2 26 26 H 1.09000 * 113.76595 * 252.35814 * 10 9 7 27 27 H 1.08996 * 113.76597 * 23.75323 * 10 9 7 28 28 H 0.97001 * 119.99647 * 355.38780 * 14 12 11 29 29 H 1.07994 * 120.02310 * 0.02562 * 16 15 14 30 30 H 1.07999 * 119.95759 * 179.71989 * 19 17 16 31 31 H 1.08002 * 120.02141 * 180.02562 * 22 20 19 32 32 H 1.09001 * 113.76822 * 270.33252 * 23 11 10 33 33 H 1.09000 * 113.87122 * 138.95206 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4991 0.0005 10 6 0.7559 -2.9292 -1.3924 11 7 1.1903 -4.2912 -1.0121 12 6 0.8402 -5.5354 -1.3940 13 8 1.3842 -6.5006 -0.8932 14 7 -0.1128 -5.7098 -2.3308 15 6 -0.4086 -6.9955 -2.7973 16 6 -0.7687 -7.1878 -4.1243 17 6 -1.0555 -8.4606 -4.5848 18 9 -1.4006 -8.6489 -5.8773 19 6 -0.9944 -9.5406 -3.7205 20 6 -0.6410 -9.3502 -2.3953 21 9 -0.5816 -10.4056 -1.5540 22 6 -0.3477 -8.0798 -1.9323 23 6 2.1606 -3.7402 -0.0463 24 1 -0.4850 0.8401 -0.0004 25 1 0.4832 -2.5466 0.7730 26 1 -0.3214 -2.8308 -1.5255 27 1 1.3284 -2.4989 -2.2141 28 1 -0.5937 -4.9439 -2.6818 29 1 -0.8204 -6.3451 -4.7977 30 1 -1.2230 -10.5329 -4.0803 31 1 -0.0716 -7.9317 -0.8987 32 1 3.1447 -3.5477 -0.4735 33 1 2.2054 -4.2878 0.8951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596457141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = -54.545063 kcal Electronic energy + Delta-G solvation = -20974.145807 eV Core-core repulsion = 17251.359641 eV Total energy + Delta-G solvation = -3722.786166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.16066 -49.05165 -40.48533 -38.78055 -37.17778 -34.50510 -32.77819 -30.43338 -30.35360 -28.51967 -25.34291 -25.22059 -23.21458 -22.85777 -20.79707 -19.26838 -18.61844 -17.57102 -16.92341 -16.72495 -16.58598 -16.09423 -16.00657 -15.69360 -15.40040 -15.01314 -14.75258 -14.57158 -14.32437 -13.67924 -13.01558 -12.84942 -12.27923 -12.23833 -12.06311 -12.01914 -11.72193 -11.37048 -11.05899 -10.89009 -10.51718 -10.33417 -9.97193 -9.43775 -9.20470 -8.86585 -8.68911 -8.48488 -7.93631 -6.26935 -4.33007 0.83513 0.89793 2.58827 3.11814 3.20071 3.26021 3.28336 3.54925 3.74400 4.10826 4.27084 4.27567 4.68270 4.74544 4.94346 5.04216 5.14236 5.67424 5.70550 5.83809 5.91096 6.01814 6.07077 6.14447 6.26803 6.31393 6.33391 6.46778 6.60088 6.79459 7.33627 7.45304 7.70582 8.05938 8.38919 8.70419 8.76821 9.34592 10.82635 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032953 B = 0.003332 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.495971 B = 8402.045222 C = 8969.896920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.102 3.898 11 N -0.653 5.653 12 C 0.717 3.283 13 O -0.590 6.590 14 N -0.685 5.685 15 C 0.240 3.760 16 C -0.201 4.201 17 C 0.150 3.850 18 F -0.131 7.131 19 C -0.218 4.218 20 C 0.150 3.850 21 F -0.130 7.130 22 C -0.170 4.170 23 C 0.125 3.875 24 H 0.265 0.735 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.413 0.587 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -12.044 -7.660 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.020 4.020 11 N -0.390 5.390 12 C 0.421 3.579 13 O -0.469 6.469 14 N -0.332 5.332 15 C 0.142 3.858 16 C -0.223 4.223 17 C 0.129 3.871 18 F -0.110 7.110 19 C -0.239 4.239 20 C 0.129 3.871 21 F -0.108 7.108 22 C -0.192 4.192 23 C 0.003 3.997 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.249 0.751 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.093 0.907 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.351 -12.733 -7.309 15.059 hybrid contribution 0.086 1.088 -0.480 1.192 sum -3.264 -11.645 -7.789 14.385 Atomic orbital electron populations 1.69927 1.06072 1.27362 1.48950 1.25014 0.94878 0.99419 0.94169 0.86580 0.79597 0.82549 0.78881 1.20059 1.21210 1.20007 1.20925 0.93093 0.89588 1.52426 0.91800 1.20483 0.94192 0.91353 0.92318 1.23842 0.99286 0.76237 1.02614 1.49820 1.42395 1.03002 1.43783 1.15595 0.79622 0.83445 0.79280 1.90868 1.58428 1.38774 1.58813 1.42663 1.40145 1.06982 1.43361 1.16800 0.93920 0.84719 0.90384 1.20816 1.09492 0.97021 0.94967 1.16773 0.98896 0.92824 0.78568 1.91525 1.89466 1.95939 1.34047 1.20884 1.10073 1.00238 0.92714 1.17008 0.99279 0.83747 0.87031 1.91529 1.93709 1.55131 1.70445 1.21408 1.04535 0.90154 1.03072 1.23471 0.93378 0.92848 0.89969 0.92509 0.91652 0.91844 0.90497 0.75074 0.83734 0.83624 0.82041 0.90665 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.99 13.29 55.43 0.74 -22.26 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -12.62 8.77 -34.44 -0.30 -12.92 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 0.78 3.60 -90.84 -0.33 0.46 16 10 C 0.10 1.96 8.03 -2.77 -0.02 1.93 16 11 N -0.65 -12.32 3.62 -183.85 -0.66 -12.98 16 12 C 0.72 13.23 8.60 -86.92 -0.75 12.49 16 13 O -0.59 -12.42 14.50 5.29 0.08 -12.34 16 14 N -0.68 -10.02 5.34 -14.24 -0.08 -10.10 16 15 C 0.24 3.30 6.30 -83.71 -0.53 2.77 16 16 C -0.20 -2.31 9.94 -39.32 -0.39 -2.70 16 17 C 0.15 1.69 7.30 -39.45 -0.29 1.40 16 18 F -0.13 -1.46 17.27 2.25 0.04 -1.43 16 19 C -0.22 -2.44 10.00 -39.41 -0.39 -2.83 16 20 C 0.15 1.93 7.30 -39.45 -0.29 1.65 16 21 F -0.13 -1.71 17.27 2.25 0.04 -1.68 16 22 C -0.17 -2.48 8.67 -39.32 -0.34 -2.82 16 23 C 0.13 2.44 8.39 -2.97 -0.02 2.41 16 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 25 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 28 H 0.41 5.09 8.44 -40.82 -0.34 4.75 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.16 2.68 6.22 -52.49 -0.33 2.36 16 32 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -26.97 302.00 -7.24 -34.21 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.17 Total: 4.25 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.75 Total: 3.45 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.00 Total: -45.33 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.97 -7.24 -34.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596457141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.336 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds