Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47038 * 270.00287 * 3 2 1 5 5 H 1.48498 * 109.47090 * 30.00671 * 3 2 1 6 6 H 1.48502 * 109.46951 * 150.00111 * 3 2 1 7 7 C 1.37877 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53494 * 114.20391 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98188 * 220.14433 * 10 9 7 12 12 C 1.34785 * 136.05843 * 207.08650 * 11 10 9 13 13 O 1.21587 * 119.99920 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.40190 * 120.00268 * 184.45311 * 14 12 11 16 16 C 1.38778 * 120.04795 * 325.36289 * 15 14 12 17 17 C 1.38157 * 119.97856 * 179.69569 * 16 15 14 18 18 C 1.38471 * 120.08374 * 0.26042 * 17 16 15 19 19 F 1.35102 * 119.94798 * 180.02562 * 18 17 16 20 20 C 1.38460 * 120.10414 * 0.04189 * 18 17 16 21 21 C 1.38302 * 120.01739 * 359.97095 * 20 18 17 22 22 F 1.35100 * 120.04029 * 180.02562 * 21 20 18 23 23 C 1.47061 * 87.88560 * 27.34249 * 11 10 9 24 24 H 0.96994 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08999 * 113.27839 * 313.06163 * 9 7 2 26 26 H 1.09004 * 113.46867 * 105.37372 * 10 9 7 27 27 H 1.08994 * 113.52356 * 334.93172 * 10 9 7 28 28 H 0.96998 * 119.99968 * 4.45130 * 14 12 11 29 29 H 1.07994 * 120.01028 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.95833 * 180.27592 * 17 16 15 31 31 H 1.07996 * 119.98581 * 179.97438 * 20 18 17 32 32 H 1.09009 * 113.46638 * 87.43427 * 23 11 10 33 33 H 1.08998 * 113.47338 * 217.87355 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2073 -4.3593 -0.9481 12 6 0.8319 -5.6140 -1.2668 13 8 1.3300 -6.5623 -0.6915 14 7 -0.0950 -5.8175 -2.2238 15 6 -0.5538 -7.1150 -2.4907 16 6 0.3123 -8.1941 -2.3841 17 6 -0.1431 -9.4728 -2.6413 18 6 -1.4616 -9.6789 -3.0108 19 9 -1.9041 -10.9306 -3.2612 20 6 -2.3271 -8.6041 -3.1244 21 6 -1.8757 -7.3222 -2.8681 22 9 -2.7199 -6.2732 -2.9783 23 6 0.8604 -3.0034 -1.3995 24 1 -0.4850 0.8400 0.0004 25 1 0.4439 -2.5306 0.7313 26 1 2.1878 -4.2513 0.9636 27 1 3.1376 -3.5675 -0.4240 28 1 -0.4445 -5.0662 -2.7280 29 1 1.3407 -8.0347 -2.0957 30 1 0.5301 -10.3128 -2.5539 31 1 -3.3549 -8.7670 -3.4131 32 1 1.5093 -2.6304 -2.1921 33 1 -0.1982 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596458071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = -50.064080 kcal Electronic energy + Delta-G solvation = -21120.111754 eV Core-core repulsion = 17397.519898 eV Total energy + Delta-G solvation = -3722.591856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.08738 -49.06606 -40.40740 -38.85088 -37.30908 -34.49291 -32.77813 -31.00204 -30.05780 -28.24290 -25.21926 -25.08538 -23.58447 -22.63946 -20.83805 -19.29194 -18.41356 -17.91387 -17.21257 -17.02045 -16.56099 -16.10572 -15.77577 -15.44128 -15.18552 -14.95295 -14.64844 -14.49377 -14.15172 -13.71328 -13.06990 -12.87144 -12.50849 -12.33887 -12.22693 -11.71554 -11.64338 -11.41813 -11.04562 -10.85832 -10.43416 -10.34997 -9.92794 -9.35174 -9.22963 -9.12355 -8.66535 -8.29904 -7.86805 -6.25019 -4.31377 0.79650 0.89818 2.64782 3.13328 3.19610 3.27954 3.30613 3.54850 3.75035 4.09744 4.23358 4.29341 4.48506 4.70392 5.01499 5.04685 5.30203 5.62419 5.72417 5.83556 5.96764 6.01123 6.06691 6.11420 6.29560 6.33566 6.35526 6.49014 6.63316 6.79021 7.34713 7.47834 7.72543 8.09174 8.42346 8.73108 8.79131 9.36172 10.84620 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039805 B = 0.003399 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.252258 B = 8235.339546 C = 8793.988625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.037 3.963 10 C 0.122 3.878 11 N -0.657 5.657 12 C 0.727 3.273 13 O -0.592 6.592 14 N -0.684 5.684 15 C 0.142 3.858 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.101 3.899 19 F -0.136 7.136 20 C -0.171 4.171 21 C 0.093 3.907 22 F -0.128 7.128 23 C 0.094 3.906 24 H 0.265 0.735 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.411 0.589 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 -13.446 -7.359 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.018 3.982 10 C 0.000 4.000 11 N -0.393 5.393 12 C 0.431 3.569 13 O -0.472 6.472 14 N -0.331 5.331 15 C 0.044 3.956 16 C -0.090 4.090 17 C -0.160 4.160 18 C 0.080 3.920 19 F -0.115 7.115 20 C -0.191 4.191 21 C 0.071 3.929 22 F -0.107 7.107 23 C -0.028 4.028 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.248 0.752 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.094 0.906 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.489 -14.111 -6.943 15.923 hybrid contribution -0.192 1.282 -0.489 1.386 sum -2.681 -12.829 -7.432 15.067 Atomic orbital electron populations 1.69945 1.06103 1.27274 1.48798 1.25037 0.94873 0.99483 0.94117 0.86515 0.79916 0.82875 0.78274 1.20490 1.21104 1.19633 1.20892 0.93059 0.89420 1.52346 0.91705 1.20381 0.94808 0.91093 0.91907 1.23312 0.93743 0.92211 0.90752 1.49193 1.44699 1.03069 1.42363 1.15287 0.79586 0.82640 0.79381 1.90841 1.59434 1.40121 1.56765 1.42530 1.44565 1.06963 1.39059 1.17600 0.90533 0.86125 1.01310 1.21207 1.01275 0.89686 0.96826 1.21132 0.94271 0.98473 1.02173 1.17238 0.92840 0.79141 1.02764 1.91507 1.89901 1.38138 1.91919 1.20784 1.01680 0.90061 1.06589 1.17076 0.85889 0.84091 1.05867 1.91528 1.69880 1.55442 1.93846 1.23739 0.99757 0.76679 1.02628 0.92539 0.91181 0.92187 0.90740 0.75248 0.81969 0.83795 0.83265 0.90622 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.48 13.26 55.43 0.74 -22.75 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.52 -12.71 8.83 -34.44 -0.30 -13.02 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 0.84 3.79 -91.12 -0.35 0.50 16 10 C 0.12 2.41 8.17 -8.51 -0.07 2.34 16 11 N -0.66 -12.73 3.69 -190.88 -0.70 -13.44 16 12 C 0.73 13.75 8.64 -86.91 -0.75 13.00 16 13 O -0.59 -12.35 14.53 5.29 0.08 -12.28 16 14 N -0.68 -10.75 5.24 -14.15 -0.07 -10.83 16 15 C 0.14 2.04 6.32 -83.54 -0.53 1.51 16 16 C -0.07 -0.93 8.70 -39.41 -0.34 -1.27 16 17 C -0.14 -1.57 10.02 -39.53 -0.40 -1.96 16 18 C 0.10 1.13 7.30 -39.41 -0.29 0.84 16 19 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 20 C -0.17 -1.91 10.00 -39.48 -0.39 -2.30 16 21 C 0.09 1.21 7.31 -39.27 -0.29 0.93 16 22 F -0.13 -1.74 16.95 2.25 0.04 -1.70 16 23 C 0.09 1.87 7.87 -8.38 -0.07 1.81 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 28 H 0.41 5.87 8.38 -40.82 -0.34 5.52 16 29 H 0.16 2.37 6.19 -52.49 -0.32 2.05 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.08 1.46 8.10 -51.92 -0.42 1.04 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -27.28 301.60 -7.40 -34.68 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.17 Total: 4.73 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.87 Total: 4.01 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.04 Total: -47.01 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.28 -7.40 -34.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596458071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.385 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds