Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47038 * 270.00287 * 3 2 1 5 5 H 1.48498 * 109.47090 * 30.00671 * 3 2 1 6 6 H 1.48502 * 109.46951 * 150.00111 * 3 2 1 7 7 C 1.37877 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53494 * 114.20391 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98188 * 220.14433 * 10 9 7 12 12 C 1.34785 * 136.05843 * 207.08650 * 11 10 9 13 13 O 1.21587 * 119.99920 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.40190 * 120.00268 * 184.45311 * 14 12 11 16 16 C 1.38778 * 120.04795 * 325.36289 * 15 14 12 17 17 C 1.38157 * 119.97856 * 179.69569 * 16 15 14 18 18 C 1.38471 * 120.08374 * 0.26042 * 17 16 15 19 19 F 1.35102 * 119.94798 * 180.02562 * 18 17 16 20 20 C 1.38460 * 120.10414 * 0.04189 * 18 17 16 21 21 C 1.38302 * 120.01739 * 359.97095 * 20 18 17 22 22 F 1.35100 * 120.04029 * 180.02562 * 21 20 18 23 23 C 1.47061 * 87.88560 * 27.34249 * 11 10 9 24 24 H 0.96994 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08999 * 113.27839 * 313.06163 * 9 7 2 26 26 H 1.09004 * 113.46867 * 105.37372 * 10 9 7 27 27 H 1.08994 * 113.52356 * 334.93172 * 10 9 7 28 28 H 0.96998 * 119.99968 * 4.45130 * 14 12 11 29 29 H 1.07994 * 120.01028 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.95833 * 180.27592 * 17 16 15 31 31 H 1.07996 * 119.98581 * 179.97438 * 20 18 17 32 32 H 1.09009 * 113.46638 * 87.43427 * 23 11 10 33 33 H 1.08998 * 113.47338 * 217.87355 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2073 -4.3593 -0.9481 12 6 0.8319 -5.6140 -1.2668 13 8 1.3300 -6.5623 -0.6915 14 7 -0.0950 -5.8175 -2.2238 15 6 -0.5538 -7.1150 -2.4907 16 6 0.3123 -8.1941 -2.3841 17 6 -0.1431 -9.4728 -2.6413 18 6 -1.4616 -9.6789 -3.0108 19 9 -1.9041 -10.9306 -3.2612 20 6 -2.3271 -8.6041 -3.1244 21 6 -1.8757 -7.3222 -2.8681 22 9 -2.7199 -6.2732 -2.9783 23 6 0.8604 -3.0034 -1.3995 24 1 -0.4850 0.8400 0.0004 25 1 0.4439 -2.5306 0.7313 26 1 2.1878 -4.2513 0.9636 27 1 3.1376 -3.5675 -0.4240 28 1 -0.4445 -5.0662 -2.7280 29 1 1.3407 -8.0347 -2.0957 30 1 0.5301 -10.3128 -2.5539 31 1 -3.3549 -8.7670 -3.4131 32 1 1.5093 -2.6304 -2.1921 33 1 -0.1982 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596458071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = -64.778940 kcal Electronic energy + Delta-G solvation = -21120.749838 eV Core-core repulsion = 17397.519898 eV Total energy + Delta-G solvation = -3723.229940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.11470 -49.97865 -41.79231 -40.15340 -38.71552 -35.79333 -34.65246 -31.99219 -31.45039 -29.60796 -26.97108 -26.69274 -24.63185 -23.73952 -22.36282 -20.75566 -19.56197 -19.11390 -18.67723 -18.42746 -17.89404 -17.16424 -16.79790 -16.68126 -16.52558 -16.33820 -16.22124 -15.56848 -15.38813 -15.06385 -14.43682 -14.14213 -14.06453 -13.58106 -13.35676 -13.26712 -13.12683 -12.78768 -12.69010 -12.54949 -12.19124 -11.66631 -11.39120 -11.06841 -10.97424 -10.54348 -10.11858 -9.71958 -9.13411 -8.16486 -6.27599 -0.20409 -0.06224 1.29633 1.48390 1.51624 1.60303 1.86409 2.36238 2.45592 2.70889 2.78364 3.14682 3.24795 3.55067 3.82297 4.01769 4.17233 4.29543 4.37710 4.48510 4.64490 4.68958 4.71996 4.85730 4.88090 4.96141 5.01769 5.03877 5.24954 5.60304 5.73708 5.81894 6.00580 6.22701 6.81941 6.90182 7.31608 7.43240 8.93408 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039805 B = 0.003399 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.252258 B = 8235.339546 C = 8793.988625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.023 3.977 10 C 0.130 3.870 11 N -0.659 5.659 12 C 0.726 3.274 13 O -0.613 6.613 14 N -0.677 5.677 15 C 0.117 3.883 16 C -0.078 4.078 17 C -0.129 4.129 18 C 0.107 3.893 19 F -0.131 7.131 20 C -0.160 4.160 21 C 0.089 3.911 22 F -0.134 7.134 23 C 0.110 3.890 24 H 0.264 0.736 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.417 0.583 29 H 0.149 0.851 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -14.455 -8.297 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.004 3.996 10 C 0.008 3.992 11 N -0.396 5.396 12 C 0.430 3.570 13 O -0.495 6.495 14 N -0.324 5.324 15 C 0.020 3.980 16 C -0.098 4.098 17 C -0.148 4.148 18 C 0.087 3.913 19 F -0.110 7.110 20 C -0.180 4.180 21 C 0.067 3.933 22 F -0.112 7.112 23 C -0.012 4.012 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.254 0.746 29 H 0.166 0.834 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.103 0.897 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.335 -15.147 -7.905 17.245 hybrid contribution -0.284 1.451 -0.204 1.492 sum -2.618 -13.696 -8.110 16.131 Atomic orbital electron populations 1.70057 1.07466 1.27846 1.50343 1.25762 0.95524 1.02583 0.94059 0.85549 0.78721 0.79010 0.78335 1.19899 1.21534 1.18993 1.21214 0.93460 0.90291 1.51464 0.91202 1.20256 0.94722 0.91792 0.92833 1.23176 0.93938 0.90856 0.91223 1.49082 1.44846 1.03200 1.42450 1.15351 0.79932 0.81969 0.79713 1.90823 1.60376 1.40513 1.57753 1.42355 1.43746 1.08031 1.38265 1.17838 0.91496 0.85594 1.03035 1.21114 1.00635 0.90450 0.97636 1.21325 0.94728 0.98231 1.00559 1.17253 0.92773 0.79265 1.02058 1.91530 1.89827 1.37840 1.91785 1.21002 1.02825 0.89067 1.05119 1.17128 0.85329 0.84651 1.06236 1.91516 1.69917 1.55856 1.93953 1.23465 0.99811 0.76761 1.01170 0.92700 0.94308 0.92141 0.89306 0.74591 0.83381 0.81274 0.80838 0.89704 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.41 13.26 21.45 0.28 -49.12 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.96 39.84 29.54 68.60 2.03 41.87 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.53 -25.71 8.83 25.60 0.23 -25.49 16 8 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.02 1.07 3.79 -11.12 -0.04 1.02 16 10 C 0.13 5.13 8.17 83.17 0.68 5.81 16 11 N -0.66 -25.43 3.69 -876.09 -3.23 -28.66 16 12 C 0.73 27.34 8.64 179.05 1.55 28.88 16 13 O -0.61 -25.53 14.53 -3.99 -0.06 -25.59 16 14 N -0.68 -21.07 5.24 -316.93 -1.66 -22.73 16 15 C 0.12 3.26 6.32 38.12 0.24 3.50 16 16 C -0.08 -2.00 8.70 22.38 0.19 -1.81 16 17 C -0.13 -2.58 10.02 22.31 0.22 -2.35 16 18 C 0.11 2.10 7.30 22.38 0.16 2.26 16 19 F -0.13 -2.51 17.26 44.97 0.78 -1.73 16 20 C -0.16 -3.16 10.00 22.34 0.22 -2.94 16 21 C 0.09 2.18 7.31 22.47 0.16 2.34 16 22 F -0.13 -3.49 16.95 44.97 0.76 -2.72 16 23 C 0.11 4.37 7.87 83.26 0.66 5.03 16 24 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 25 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 26 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.09 3.23 8.10 -2.39 -0.02 3.22 16 28 H 0.42 11.78 8.38 -92.71 -0.78 11.00 16 29 H 0.15 4.29 6.19 -2.91 -0.02 4.27 16 30 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.08 3.21 8.10 -2.38 -0.02 3.19 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -57.42 301.60 4.03 -53.39 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.39 Total: 17.52 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 4.74 Total: 17.78 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.61 Total: -100.51 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.54 Total: -4.46 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -57.42 4.03 -53.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596458071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.390 kcal (2) G-P(sol) polarization free energy of solvation -57.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds