Wall clock time and date at job start Tue Mar 31 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36039 * 116.99944 * 2 1 4 4 C 1.36643 * 120.38253 * 0.02562 * 3 2 1 5 5 C 1.40265 * 119.24751 * 180.02562 * 4 3 2 6 6 N 1.48002 * 119.99229 * 179.97438 * 5 4 3 7 7 O 1.21803 * 120.00002 * 180.02562 * 6 5 4 8 8 O 1.21794 * 120.00164 * 0.02594 * 6 5 4 9 9 C 1.35234 * 120.01761 * 0.02562 * 5 4 3 10 10 N 1.35955 * 120.78933 * 359.95653 * 9 5 4 11 11 C 1.46497 * 119.62391 * 179.74382 * 10 9 5 12 12 C 1.52999 * 109.47124 * 90.00192 * 11 10 9 13 13 C 1.52999 * 109.46977 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00043 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47279 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47390 * 119.99640 * 18 16 14 21 21 H 1.48506 * 109.47453 * 239.99960 * 18 16 14 22 22 C 1.34673 * 120.75460 * 0.02562 * 10 9 5 23 23 O 1.22084 * 120.01836 * 179.97438 * 22 10 9 24 24 H 1.09007 * 109.47246 * 60.00001 * 1 2 3 25 25 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47425 * 299.99965 * 1 2 3 27 27 H 1.07995 * 120.37551 * 0.03600 * 4 3 2 28 28 H 1.08002 * 119.61283 * 179.97438 * 9 5 4 29 29 H 1.08999 * 109.47402 * 210.00514 * 11 10 9 30 30 H 1.08999 * 109.46997 * 329.99945 * 11 10 9 31 31 H 1.09009 * 109.47135 * 299.99861 * 12 11 10 32 32 H 1.08999 * 109.47385 * 59.99990 * 12 11 10 33 33 H 1.08994 * 109.47306 * 299.99633 * 13 12 11 34 34 H 1.08995 * 109.47423 * 60.00120 * 13 12 11 35 35 H 0.96996 * 119.99902 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.3100 2.3630 0.0005 5 6 1.9714 3.6000 0.0000 6 7 1.1899 4.8568 0.0000 7 8 1.7641 5.9310 -0.0010 8 8 -0.0274 4.8170 0.0009 9 6 3.3230 3.6444 -0.0016 10 7 4.0570 2.5000 -0.0018 11 6 5.5198 2.5779 -0.0092 12 6 6.0362 2.6093 1.4307 13 6 7.5640 2.6913 1.4229 14 6 8.0725 2.7228 2.8412 15 1 7.3758 2.6883 3.6656 16 6 9.4274 2.7958 3.0863 17 7 10.2759 2.8373 2.0824 18 14 10.0577 2.8356 4.8442 19 1 8.9089 2.7785 5.7835 20 1 10.9471 1.6695 5.0778 21 1 10.8183 4.0911 5.0691 22 6 3.4545 1.2955 -0.0009 23 8 4.1267 0.2764 -0.0015 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2309 2.3208 0.0015 28 1 3.8256 4.6004 -0.0024 29 1 5.9275 1.7070 -0.5225 30 1 5.8328 3.4844 -0.5273 31 1 5.6286 3.4803 1.9440 32 1 5.7233 1.7028 1.9488 33 1 7.9720 1.8206 0.9096 34 1 7.8766 3.5979 0.9050 35 1 11.2290 2.8890 2.2548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603362499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:35 Heat of formation + Delta-G solvation = -45.912413 kcal Electronic energy + Delta-G solvation = -21723.149469 eV Core-core repulsion = 18111.825159 eV Total energy + Delta-G solvation = -3611.324310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.55191 -41.70755 -39.24134 -37.51724 -36.64246 -35.38390 -33.51008 -31.56515 -30.76170 -28.19783 -27.57333 -26.40221 -24.50275 -23.32664 -22.50599 -20.71896 -19.82911 -19.27029 -18.05130 -17.69076 -17.39766 -17.31527 -16.64422 -16.58033 -15.75013 -15.29774 -15.18572 -14.52513 -14.32894 -13.86138 -13.25355 -13.08680 -12.49982 -12.30214 -12.15457 -11.84644 -11.79534 -11.69268 -11.35840 -11.24885 -11.15369 -10.97919 -10.76944 -10.47865 -10.25300 -10.04448 -9.61366 -9.26222 -8.48339 -8.28610 -6.13082 -4.16376 -0.14585 0.36608 1.05137 1.45523 1.96807 2.93829 2.97440 3.24591 3.32666 3.36422 3.92529 4.04202 4.11003 4.36037 4.49380 4.70865 4.77928 4.87255 5.06487 5.17723 5.23806 5.25567 5.29311 5.57198 5.62993 6.03831 6.20305 6.36618 6.41806 6.67478 6.72991 7.41365 7.45089 7.54515 7.55169 7.83824 8.23903 8.89272 9.48969 10.98174 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.003936 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.680235 B = 7112.184450 C = 7993.039429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.282 6.282 3 C 0.040 3.960 4 C -0.128 4.128 5 C -0.127 4.127 6 N 0.056 4.944 7 O -0.171 6.171 8 O -0.168 6.168 9 C 0.218 3.782 10 N -0.468 5.468 11 C 0.084 3.916 12 C -0.126 4.126 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.527 3.473 23 O -0.481 6.481 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.161 0.839 28 H 0.196 0.804 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.919 -0.222 -6.816 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.193 6.193 3 C -0.011 4.011 4 C -0.150 4.150 5 C -0.218 4.218 6 N 0.570 4.430 7 O -0.383 6.383 8 O -0.381 6.381 9 C 0.083 3.917 10 N -0.179 5.179 11 C -0.035 4.035 12 C -0.164 4.164 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.323 3.677 23 O -0.357 6.357 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.179 0.821 28 H 0.212 0.788 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.782 -1.762 -6.862 19.141 hybrid contribution -0.138 0.576 0.974 1.140 sum -17.920 -1.187 -5.888 18.900 Atomic orbital electron populations 1.23267 0.77400 1.04878 1.01846 1.86216 1.21633 1.23546 1.87921 1.19233 0.91639 0.85618 1.04617 1.20775 1.02340 0.88823 1.03107 1.19497 0.90470 0.85162 1.26670 1.42944 1.01080 1.01753 0.97178 1.94566 1.72747 1.16503 1.54492 1.94522 0.95251 1.93977 1.54342 1.21713 0.90647 0.93436 0.85915 1.45809 1.11026 1.04629 1.56430 1.22830 0.71848 1.05887 1.02891 1.22110 1.01403 1.01830 0.91032 1.19046 0.86365 0.97796 0.97973 1.21167 0.91875 1.51120 0.92083 0.92566 1.25001 0.96998 0.95011 0.97247 1.69952 1.02426 1.50244 1.30572 0.86505 0.78932 0.77707 0.84699 1.19729 1.20881 1.20872 1.16313 0.87277 0.83594 0.80533 1.91092 1.65619 1.32104 1.46841 0.92091 0.87282 0.92033 0.82122 0.78753 0.87102 0.87863 0.92378 0.91992 0.95912 0.96030 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.14 16 2 O -0.28 -3.43 10.30 -36.42 -0.38 -3.80 16 3 C 0.04 0.50 6.71 -39.10 -0.26 0.24 16 4 C -0.13 -1.37 8.59 -39.40 -0.34 -1.71 16 5 C -0.13 -1.43 6.82 -80.26 -0.55 -1.98 16 6 N 0.06 0.70 4.45 33.81 0.15 0.85 16 7 O -0.17 -2.26 18.39 -29.46 -0.54 -2.80 16 8 O -0.17 -2.20 18.49 -29.46 -0.54 -2.74 16 9 C 0.22 2.32 9.81 -16.79 -0.16 2.16 16 10 N -0.47 -5.99 2.59 -119.58 -0.31 -6.30 16 11 C 0.08 1.16 5.34 -4.04 -0.02 1.14 16 12 C -0.13 -2.28 5.48 -26.73 -0.15 -2.43 16 13 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.53 7.84 7.43 -15.24 -0.11 7.72 16 23 O -0.48 -8.92 16.44 -11.72 -0.19 -9.11 16 24 H 0.06 0.33 7.68 -51.93 -0.40 -0.06 16 25 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 27 H 0.16 1.38 5.94 -52.49 -0.31 1.07 16 28 H 0.20 1.59 7.51 -52.49 -0.39 1.19 16 29 H 0.11 1.66 7.38 -51.93 -0.38 1.27 16 30 H 0.10 1.14 8.01 -51.93 -0.42 0.73 16 31 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -32.43 315.29 -6.45 -38.89 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.96 Total: -4.59 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.15 Total: -6.17 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.58 Total: -30.50 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.65 Total: -18.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.43 -6.45 -38.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603362499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.026 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds