Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47276 * 270.00484 * 3 2 1 5 5 H 1.48501 * 109.47229 * 30.00190 * 3 2 1 6 6 H 1.48500 * 109.47113 * 150.00061 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00404 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00132 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47531 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47293 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47300 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00239 * 180.02562 * 12 11 10 14 14 S 1.71202 * 119.99914 * 359.97438 * 13 12 11 15 15 N 1.34783 * 120.00018 * 180.27594 * 13 12 11 16 16 C 1.40017 * 119.99913 * 175.41100 * 15 13 12 17 17 C 1.38820 * 120.07697 * 47.27517 * 16 15 13 18 18 C 1.38149 * 119.95037 * 179.97438 * 17 16 15 19 19 C 1.38281 * 120.11377 * 0.02562 * 18 17 16 20 20 C 1.38270 * 120.15471 * 359.97438 * 19 18 17 21 21 C 1.38299 * 120.05147 * 359.67994 * 20 19 18 22 22 F 1.35099 * 120.06416 * 180.32456 * 21 20 19 23 23 H 0.97003 * 119.99984 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47085 * 59.99994 * 9 7 2 25 25 H 1.08996 * 109.46944 * 300.00294 * 9 7 2 26 26 H 1.09004 * 109.46666 * 60.00075 * 10 9 7 27 27 H 1.08996 * 109.47032 * 300.00478 * 10 9 7 28 28 H 1.09004 * 109.46944 * 60.00563 * 11 10 9 29 29 H 1.08996 * 109.47732 * 300.00367 * 11 10 9 30 30 H 0.96999 * 119.99886 * 0.02562 * 12 11 10 31 31 H 0.96999 * 119.99461 * 355.41187 * 15 13 12 32 32 H 1.07994 * 120.02304 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.93735 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92115 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.97349 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0397 -4.0179 -0.0027 13 6 7.3648 -4.2642 -0.0033 14 16 8.4773 -2.9629 -0.0041 15 7 7.8140 -5.5349 -0.0094 16 6 9.1870 -5.7916 -0.1070 17 6 10.0831 -5.0990 0.6957 18 6 11.4371 -5.3547 0.5976 19 6 11.9016 -6.2992 -0.2992 20 6 11.0131 -6.9917 -1.1010 21 6 9.6556 -6.7461 -1.0032 22 9 8.7868 -7.4273 -1.7818 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8744 -0.6801 -0.8911 26 1 3.6578 -3.1506 -0.8908 27 1 3.6584 -3.1503 0.8892 28 1 5.9154 -2.1226 0.8874 29 1 5.9141 -2.1232 -0.8926 30 1 5.4094 -4.7551 -0.0026 31 1 7.1861 -6.2716 0.0539 32 1 9.7219 -4.3608 1.3964 33 1 12.1341 -4.8154 1.2219 34 1 12.9609 -6.4963 -0.3736 35 1 11.3792 -7.7285 -1.8008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728798633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -7.706810 kcal Electronic energy + Delta-G solvation = -18574.492197 eV Core-core repulsion = 15419.950267 eV Total energy + Delta-G solvation = -3154.541931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.24195 -40.17841 -38.44482 -36.03802 -33.72465 -31.80727 -30.89694 -29.81414 -27.34119 -24.63949 -23.32829 -22.78395 -22.45670 -20.51454 -18.94710 -18.34400 -17.52339 -16.78504 -16.57069 -16.14791 -15.83454 -15.46798 -15.12890 -14.80843 -14.19834 -14.09186 -14.03604 -13.34875 -12.77945 -12.72622 -12.27766 -12.10321 -11.96867 -11.60620 -11.28812 -11.21028 -10.98428 -10.26528 -10.05237 -9.87082 -9.77997 -9.31351 -9.19304 -8.70890 -8.60829 -7.91940 -7.22669 -6.11738 -4.11586 0.62112 0.96911 1.34948 1.81030 2.36775 3.27923 3.29291 3.35174 3.37184 3.41203 3.86856 4.40287 4.44845 4.67240 4.92956 5.00392 5.14885 5.22190 5.22715 5.46108 5.64427 5.73015 5.82632 5.84322 5.95900 6.10097 6.19744 6.25040 6.39715 6.52582 6.61306 6.78783 7.07836 7.12312 7.25500 7.68461 8.42755 8.90706 9.49965 11.01288 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.003016 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.005669 B = 9282.151675 C = 9806.643935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.116 4.116 11 C 0.114 3.886 12 N -0.664 5.664 13 C 0.555 3.445 14 S -0.624 6.624 15 N -0.640 5.640 16 C 0.099 3.901 17 C -0.040 4.040 18 C -0.125 4.125 19 C -0.087 4.087 20 C -0.155 4.155 21 C 0.092 3.908 22 F -0.139 7.139 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.408 0.592 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.954 -16.286 0.895 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.154 4.154 11 C -0.008 4.008 12 N -0.288 5.288 13 C 0.196 3.804 14 S -0.494 6.494 15 N -0.268 5.268 16 C 0.005 3.995 17 C -0.062 4.062 18 C -0.145 4.145 19 C -0.106 4.106 20 C -0.175 4.175 21 C 0.070 3.930 22 F -0.118 7.118 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.236 0.764 31 H 0.246 0.754 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.378 -15.111 0.848 27.016 hybrid contribution -1.133 -0.599 -0.289 1.314 sum 21.245 -15.710 0.558 26.428 Atomic orbital electron populations 1.69906 1.06362 1.27088 1.50672 1.25019 0.94759 0.99308 0.94296 0.86776 0.80454 0.83396 0.78720 1.20148 1.21321 1.18710 1.21046 0.89158 0.94534 1.51605 0.91083 1.19477 0.97333 0.90783 0.97039 1.21790 0.89885 1.01829 1.01877 1.22255 0.96124 0.77743 1.04635 1.45462 1.02952 1.12365 1.68068 1.22389 0.88459 0.88989 0.80545 1.93417 1.49175 1.33443 1.73391 1.41961 1.06862 1.05440 1.72535 1.17341 0.82379 1.00591 0.99234 1.21465 0.92504 0.95595 0.96670 1.21100 0.95054 0.98443 0.99879 1.21082 0.99751 0.95021 0.94701 1.20923 0.90392 1.03347 1.02798 1.17609 0.87826 0.95845 0.91750 1.91489 1.69153 1.78275 1.72841 0.92603 0.96001 0.96433 0.92008 0.91967 0.89354 0.89405 0.76367 0.75412 0.82692 0.84771 0.84884 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -14.43 9.66 -34.44 -0.33 -14.76 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.12 -1.99 5.27 -26.74 -0.14 -2.13 16 11 C 0.11 1.71 5.13 -4.05 -0.02 1.69 16 12 N -0.66 -7.93 5.56 -62.03 -0.34 -8.27 16 13 C 0.56 7.20 7.85 -86.91 -0.68 6.52 16 14 S -0.62 -10.44 25.00 -107.50 -2.69 -13.13 16 15 N -0.64 -6.58 5.16 -11.34 -0.06 -6.64 16 16 C 0.10 1.07 5.89 -83.60 -0.49 0.58 16 17 C -0.04 -0.42 7.88 -39.40 -0.31 -0.73 16 18 C -0.12 -1.03 10.04 -39.60 -0.40 -1.43 16 19 C -0.09 -0.62 10.04 -39.55 -0.40 -1.02 16 20 C -0.15 -1.26 10.02 -39.55 -0.40 -1.65 16 21 C 0.09 0.93 7.31 -39.25 -0.29 0.64 16 22 F -0.14 -1.49 17.08 2.25 0.04 -1.45 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 25 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 29 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 30 H 0.40 3.63 8.49 -40.82 -0.35 3.28 16 31 H 0.41 3.03 8.84 -40.82 -0.36 2.67 16 32 H 0.16 1.84 6.30 -49.60 -0.31 1.53 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -33.07 314.71 -10.19 -43.26 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.32 Total: 2.09 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.67 Total: -10.75 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.37 Total: -41.50 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: -10.44 SS G_CDS: -2.69 Total: -13.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.07 -10.19 -43.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728798633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.553 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds