Wall clock time and date at job start Tue Mar 31 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48508 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46973 * 299.99530 * 3 2 1 6 6 H 1.48502 * 109.47363 * 59.99788 * 3 2 1 7 7 C 1.38753 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00176 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34307 * 116.99914 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00413 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99881 * 180.02562 * 10 9 7 13 13 H 1.09002 * 115.55637 * 325.68378 * 12 10 9 14 14 C 1.52995 * 117.50050 * 111.37275 * 12 10 9 15 15 C 1.52998 * 60.00091 * 107.48915 * 14 12 10 16 16 H 1.09005 * 117.49743 * 107.51099 * 15 14 12 17 17 C 1.50701 * 117.50041 * 252.51084 * 15 14 12 18 18 C 1.36128 * 120.16925 * 9.14035 * 17 15 14 19 19 C 1.39335 * 120.98540 * 180.02562 * 18 17 15 20 20 C 1.36125 * 120.98855 * 359.69277 * 19 18 17 21 21 C 1.40499 * 119.65881 * 0.02562 * 20 19 18 22 22 C 1.40542 * 121.29770 * 179.97438 * 21 20 19 23 23 C 1.36088 * 119.65567 * 180.02562 * 22 21 20 24 24 C 1.39375 * 120.99450 * 0.02562 * 23 22 21 25 25 C 1.36085 * 120.99355 * 359.94864 * 24 23 22 26 26 C 1.40501 * 120.17188 * 188.60809 * 17 15 14 27 27 H 0.96990 * 119.99706 * 0.02562 * 1 2 3 28 28 H 1.09003 * 117.50110 * 0.02562 * 14 12 10 29 29 H 1.09001 * 117.52051 * 214.97004 * 14 12 10 30 30 H 1.08001 * 119.50595 * 359.73971 * 18 17 15 31 31 H 1.07999 * 119.50293 * 179.70850 * 19 18 17 32 32 H 1.08001 * 120.16890 * 180.02562 * 20 19 18 33 33 H 1.08004 * 120.17479 * 359.97438 * 22 21 20 34 34 H 1.08005 * 119.50453 * 179.97438 * 23 22 21 35 35 H 1.08003 * 119.50790 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.17920 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7085 1.3463 0.0006 5 1 1.8897 2.3963 -1.2126 6 1 1.8897 2.3965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0016 11 8 3.2756 -3.4331 0.0020 12 6 1.3810 -4.8393 0.0011 13 1 0.4432 -4.8894 0.5544 14 6 1.5024 -5.6935 -1.2623 15 6 2.2695 -6.0848 0.0023 16 1 1.9164 -6.9548 0.5561 17 6 3.7618 -5.8750 0.0038 18 6 4.3572 -5.1881 -1.0095 19 6 5.7355 -4.9846 -1.0254 20 6 6.5259 -5.4615 -0.0250 21 6 5.9467 -6.1703 1.0408 22 6 6.7302 -6.6782 2.0913 23 6 6.1342 -7.3604 3.1068 24 6 4.7556 -7.5648 3.1222 25 6 3.9651 -7.0873 2.1227 26 6 4.5445 -6.3777 1.0568 27 1 -0.4849 0.8400 -0.0004 28 1 2.0775 -5.2845 -2.0931 29 1 0.6447 -6.3060 -1.5405 30 1 3.7526 -4.7990 -1.8155 31 1 6.1833 -4.4403 -1.8436 32 1 7.5929 -5.2957 -0.0505 33 1 7.7998 -6.5285 2.0922 34 1 6.7387 -7.7500 3.9127 35 1 4.3078 -8.1101 3.9399 36 1 2.8982 -7.2530 2.1481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730872423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:36 Heat of formation + Delta-G solvation = 0.942999 kcal Electronic energy + Delta-G solvation = -21340.202743 eV Core-core repulsion = 18141.759499 eV Total energy + Delta-G solvation = -3198.443244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46086 -39.09234 -37.21331 -35.65413 -34.64896 -32.24190 -32.04447 -29.96769 -28.77608 -25.95559 -23.93433 -23.53971 -22.85999 -22.35691 -20.29589 -19.07232 -17.74732 -17.37926 -17.05522 -16.16251 -15.88147 -15.00737 -14.66581 -14.33960 -14.13147 -13.85085 -13.74488 -13.33990 -13.20952 -13.00913 -12.69912 -12.10296 -11.65948 -11.63316 -11.59572 -11.25840 -11.15524 -10.72090 -10.61988 -10.41432 -10.39380 -10.28173 -10.02890 -9.76792 -9.41456 -8.87456 -8.56534 -8.10931 -7.22814 -6.39626 -4.06373 0.84864 1.40922 2.33899 3.05746 3.19346 3.25445 3.26961 3.51377 3.90518 4.18104 4.45867 4.51591 4.82984 4.93779 5.06798 5.13262 5.17987 5.20004 5.26357 5.36126 5.42155 5.51004 5.66075 5.72690 5.75956 5.92472 6.02759 6.04918 6.21082 6.31251 6.44926 6.56493 6.57539 6.69641 6.83300 6.93075 7.06578 7.15683 7.39687 7.42065 7.97984 8.76783 9.09576 9.91400 10.78588 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.004909 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.122455 B = 5702.984719 C = 6123.585585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.377 4.377 8 H 0.096 0.904 9 O -0.212 6.212 10 C 0.419 3.581 11 O -0.535 6.535 12 C -0.133 4.133 13 H 0.127 0.873 14 C -0.151 4.151 15 C -0.093 4.093 16 H 0.119 0.881 17 C -0.037 4.037 18 C -0.040 4.040 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.058 4.058 22 C -0.105 4.105 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.105 4.105 26 C -0.033 4.033 27 H 0.268 0.732 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -14.231 0.817 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.453 4.453 8 H 0.113 0.887 9 O -0.119 6.119 10 C 0.266 3.734 11 O -0.432 6.432 12 C -0.152 4.152 13 H 0.145 0.855 14 C -0.188 4.188 15 C -0.111 4.111 16 H 0.137 0.863 17 C -0.037 4.037 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.058 4.058 22 C -0.123 4.123 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.123 4.123 26 C -0.033 4.033 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.750 -14.028 0.819 16.047 hybrid contribution 0.242 1.083 0.168 1.123 sum 7.992 -12.944 0.986 15.245 Atomic orbital electron populations 1.70003 1.05987 1.27485 1.46801 1.25320 0.95783 0.98814 0.96346 0.85646 0.79476 0.80232 0.78105 1.18997 1.20193 1.20194 1.21259 0.92342 0.79822 1.51919 0.88684 1.83860 1.39485 1.13282 1.75315 1.22135 0.86203 0.86139 0.78940 1.90625 1.14916 1.87316 1.50344 1.21660 1.01149 0.88474 1.03928 0.85514 1.23134 1.02391 1.01683 0.91579 1.21059 0.90341 0.97588 1.02103 0.86332 1.18558 0.92195 0.98825 0.94157 1.20448 0.94049 0.93397 0.97878 1.20720 0.93829 0.99176 0.98789 1.20843 0.99251 0.99293 0.94213 1.17951 0.92627 0.99506 0.95730 1.20942 0.99133 0.98183 0.94034 1.20705 0.94935 1.00453 0.98754 1.20728 0.93885 1.01068 0.98836 1.21028 0.99652 0.97607 0.93966 1.17768 0.92466 0.98247 0.94795 0.92192 0.87959 0.87465 0.86664 0.86562 0.86340 0.86192 0.86655 0.86570 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.67 55.48 0.76 -24.84 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.38 -11.20 9.65 30.92 0.30 -10.90 16 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.21 -6.12 9.75 -20.71 -0.20 -6.32 16 10 C 0.42 10.25 7.53 36.01 0.27 10.52 16 11 O -0.54 -13.69 10.91 -19.05 -0.21 -13.89 16 12 C -0.13 -2.43 6.30 -91.77 -0.58 -3.01 16 13 H 0.13 2.11 8.14 -51.93 -0.42 1.69 16 14 C -0.15 -2.20 9.57 -26.73 -0.26 -2.46 16 15 C -0.09 -1.43 5.49 -91.77 -0.50 -1.94 16 16 H 0.12 1.48 6.65 -51.93 -0.35 1.14 16 17 C -0.04 -0.65 4.42 -104.53 -0.46 -1.11 16 18 C -0.04 -0.71 6.09 -39.93 -0.24 -0.95 16 19 C -0.11 -1.77 9.95 -39.93 -0.40 -2.16 16 20 C -0.12 -1.83 9.77 -39.49 -0.39 -2.22 16 21 C -0.06 -0.94 5.74 -106.83 -0.61 -1.56 16 22 C -0.10 -1.43 9.77 -39.49 -0.39 -1.82 16 23 C -0.13 -1.64 9.95 -39.93 -0.40 -2.04 16 24 C -0.13 -1.64 9.95 -39.93 -0.40 -2.04 16 25 C -0.10 -1.53 9.35 -39.49 -0.37 -1.90 16 26 C -0.03 -0.56 5.74 -106.83 -0.61 -1.17 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 28 H 0.10 1.55 6.19 -51.93 -0.32 1.23 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.12 2.07 5.66 -52.49 -0.30 1.78 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.57 6.37 -52.49 -0.33 1.23 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -33.79 306.54 -8.94 -42.72 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.75 Total: 4.88 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -5.13 Total: -23.69 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.76 Total: -24.84 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.41 Total: -20.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.79 -8.94 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730872423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.668 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds