Wall clock time and date at job start Tue Mar 31 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48501 * 109.46848 * 270.00593 * 3 2 1 5 5 H 1.48503 * 109.47053 * 30.00282 * 3 2 1 6 6 H 1.48501 * 109.47105 * 150.00524 * 3 2 1 7 7 C 1.38753 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00060 * 359.97438 * 7 2 1 9 9 O 1.34919 * 120.00140 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00061 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00359 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00074 * 180.02562 * 10 9 7 13 13 H 1.09009 * 115.54929 * 34.33039 * 12 10 9 14 14 C 1.53002 * 117.49858 * 248.62799 * 12 10 9 15 15 C 1.52994 * 117.50052 * 180.02562 * 12 10 9 16 16 H 1.09001 * 117.49857 * 215.00233 * 15 12 10 17 17 C 1.50700 * 117.49916 * 359.97438 * 15 12 10 18 18 C 1.36124 * 120.17335 * 60.02080 * 17 15 12 19 19 C 1.39329 * 120.98715 * 179.97438 * 18 17 15 20 20 C 1.36134 * 120.99326 * 0.02562 * 19 18 17 21 21 C 1.40499 * 119.64785 * 359.97438 * 20 19 18 22 22 C 1.40555 * 121.29447 * 179.97438 * 21 20 19 23 23 C 1.36090 * 119.65000 * 180.02562 * 22 21 20 24 24 C 1.39378 * 121.00040 * 359.97438 * 23 22 21 25 25 C 1.36084 * 120.99271 * 0.02562 * 24 23 22 26 26 C 1.40496 * 120.17318 * 240.00051 * 17 15 12 27 27 H 0.97001 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08991 * 117.49892 * 145.02134 * 14 12 10 29 29 H 1.09000 * 117.49965 * 359.97438 * 14 12 10 30 30 H 1.08006 * 119.51075 * 359.95717 * 18 17 15 31 31 H 1.08002 * 119.50448 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.17599 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.17660 * 359.75152 * 22 21 20 34 34 H 1.07996 * 119.49480 * 180.02562 * 23 22 21 35 35 H 1.07997 * 119.50643 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.17716 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4402 0.6999 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1369 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4773 -0.0010 13 1 5.9841 -1.6909 0.5536 14 6 6.1517 -3.0082 -1.2648 15 6 6.1065 -3.8695 -0.0016 16 1 7.0359 -3.9993 0.5530 17 6 5.1787 -5.0570 -0.0015 18 6 4.2937 -5.2338 -1.0206 19 6 3.4285 -6.3258 -1.0379 20 6 3.4427 -7.2474 -0.0361 21 6 4.3424 -7.0983 1.0327 22 6 4.3862 -8.0286 2.0854 23 6 5.2707 -7.8513 3.1043 24 6 6.1369 -6.7594 3.1211 25 6 6.1230 -5.8385 2.1193 26 6 5.2228 -5.9876 1.0501 27 1 -0.4850 0.8400 0.0004 28 1 7.1109 -2.5711 -1.5419 29 1 5.5103 -3.3008 -2.0961 30 1 4.2614 -4.5168 -1.8277 31 1 2.7356 -6.4425 -1.8582 32 1 2.7665 -8.0890 -0.0630 33 1 3.7183 -8.8774 2.0880 34 1 5.3025 -8.5678 3.9117 35 1 6.8289 -6.6420 3.9418 36 1 6.8004 -4.9977 2.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730872425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:38 Heat of formation + Delta-G solvation = 3.574978 kcal Electronic energy + Delta-G solvation = -21364.183805 eV Core-core repulsion = 18165.854692 eV Total energy + Delta-G solvation = -3198.329113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52523 -39.24162 -37.36047 -35.70420 -34.82101 -32.33313 -32.15934 -29.99367 -28.81986 -26.19146 -23.94698 -23.46553 -22.88700 -22.39429 -20.29076 -19.06870 -17.92033 -17.49232 -17.10391 -16.25946 -15.94371 -15.15166 -14.85235 -14.32895 -14.14911 -13.91115 -13.67386 -13.37616 -13.16559 -12.93881 -12.72475 -12.40908 -11.91311 -11.71328 -11.65233 -11.33051 -11.22645 -10.73363 -10.67138 -10.49538 -10.34639 -10.32893 -10.12894 -9.70204 -9.47429 -8.97231 -8.66531 -8.14577 -7.28039 -6.35533 -4.10117 0.82155 1.38302 2.30325 3.03132 3.23892 3.25291 3.37748 3.44226 3.95824 4.15775 4.26078 4.44382 4.76065 4.87125 5.02869 5.06811 5.14292 5.14883 5.18881 5.27437 5.39928 5.42334 5.63306 5.68718 5.70051 5.85033 5.92841 6.00659 6.10095 6.28230 6.40853 6.48388 6.53770 6.54921 6.67437 6.90954 7.02057 7.12497 7.36868 7.77399 8.05596 8.66748 9.03692 9.73988 10.73060 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004836 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.017369 B = 5788.203117 C = 6023.092490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.377 4.377 8 H 0.109 0.891 9 O -0.250 6.250 10 C 0.431 3.569 11 O -0.518 6.518 12 C -0.138 4.138 13 H 0.128 0.872 14 C -0.151 4.151 15 C -0.089 4.089 16 H 0.120 0.880 17 C -0.040 4.040 18 C -0.042 4.042 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.104 4.104 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.106 4.106 26 C -0.033 4.033 27 H 0.279 0.721 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.889 -11.402 0.828 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.453 4.453 8 H 0.127 0.873 9 O -0.159 6.159 10 C 0.276 3.724 11 O -0.413 6.413 12 C -0.157 4.157 13 H 0.146 0.854 14 C -0.188 4.188 15 C -0.107 4.107 16 H 0.138 0.862 17 C -0.040 4.040 18 C -0.060 4.060 19 C -0.124 4.124 20 C -0.134 4.134 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.033 4.033 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.505 -11.517 0.833 17.768 hybrid contribution -0.040 0.996 0.157 1.009 sum 13.465 -10.521 0.989 17.117 Atomic orbital electron populations 1.69610 1.05698 1.28318 1.47909 1.24537 0.94983 0.98627 0.95688 0.86227 0.80296 0.81610 0.78865 1.19905 1.20821 1.18467 1.20634 0.76185 0.96890 1.51594 0.87343 1.83498 1.23830 1.31517 1.77038 1.21922 0.88907 0.82651 0.78903 1.90673 1.66531 1.35231 1.48827 1.21683 0.91435 0.98329 1.04294 0.85444 1.23162 1.02188 1.01837 0.91605 1.21052 0.99095 0.88609 1.01937 0.86180 1.18541 0.97462 0.93721 0.94269 1.20461 0.92802 0.94956 0.97804 1.20735 0.98489 0.94335 0.98846 1.20868 0.98622 0.99829 0.94080 1.17963 0.96925 0.95140 0.95704 1.20959 0.98767 0.98525 0.93947 1.20712 0.97027 0.98365 0.98719 1.20730 0.99728 0.95179 0.98790 1.21015 0.98459 0.98923 0.93959 1.17757 0.96272 0.94462 0.94796 0.91103 0.87351 0.87781 0.86655 0.86439 0.86232 0.86116 0.86613 0.86560 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.96 55.48 0.77 -25.41 16 2 C 0.07 1.88 5.49 -17.53 -0.10 1.78 16 3 Si 0.90 21.62 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -11.27 10.10 30.92 0.31 -10.95 16 8 H 0.11 3.57 7.09 -52.49 -0.37 3.20 16 9 O -0.25 -6.65 8.58 -20.70 -0.18 -6.83 16 10 C 0.43 10.02 7.54 36.01 0.27 10.29 16 11 O -0.52 -13.10 10.95 -19.05 -0.21 -13.30 16 12 C -0.14 -2.33 6.30 -91.77 -0.58 -2.91 16 13 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 14 C -0.15 -2.02 9.57 -26.75 -0.26 -2.28 16 15 C -0.09 -1.29 5.48 -91.80 -0.50 -1.79 16 16 H 0.12 1.39 6.65 -51.93 -0.35 1.04 16 17 C -0.04 -0.68 4.39 -104.53 -0.46 -1.14 16 18 C -0.04 -0.74 6.12 -39.94 -0.24 -0.99 16 19 C -0.11 -1.75 9.95 -39.93 -0.40 -2.14 16 20 C -0.12 -1.80 9.77 -39.49 -0.39 -2.19 16 21 C -0.06 -0.92 5.74 -106.83 -0.61 -1.54 16 22 C -0.10 -1.41 9.77 -39.48 -0.39 -1.80 16 23 C -0.13 -1.62 9.95 -39.93 -0.40 -2.01 16 24 C -0.13 -1.60 9.95 -39.93 -0.40 -1.99 16 25 C -0.11 -1.50 9.35 -39.48 -0.37 -1.87 16 26 C -0.03 -0.55 5.74 -106.83 -0.61 -1.16 16 27 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.46 6.18 -51.93 -0.32 1.14 16 30 H 0.12 2.02 5.68 -52.48 -0.30 1.72 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.49 6.37 -52.49 -0.33 1.16 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -33.56 305.49 -8.75 -42.31 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.76 Total: 4.56 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -5.11 Total: -22.69 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.77 Total: -25.41 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.39 Total: -20.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.56 -8.75 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730872425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.885 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds