Wall clock time and date at job start Tue Mar 31 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48501 * 109.46848 * 270.00593 * 3 2 1 5 5 H 1.48503 * 109.47053 * 30.00282 * 3 2 1 6 6 H 1.48501 * 109.47105 * 150.00524 * 3 2 1 7 7 C 1.38753 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00060 * 359.97438 * 7 2 1 9 9 O 1.34919 * 120.00140 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00061 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00359 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00074 * 180.02562 * 10 9 7 13 13 H 1.09009 * 115.54929 * 34.33039 * 12 10 9 14 14 C 1.53002 * 117.49858 * 248.62799 * 12 10 9 15 15 C 1.52994 * 117.50052 * 180.02562 * 12 10 9 16 16 H 1.09001 * 117.49857 * 215.00233 * 15 12 10 17 17 C 1.50700 * 117.49916 * 359.97438 * 15 12 10 18 18 C 1.36124 * 120.17335 * 60.02080 * 17 15 12 19 19 C 1.39329 * 120.98715 * 179.97438 * 18 17 15 20 20 C 1.36134 * 120.99326 * 0.02562 * 19 18 17 21 21 C 1.40499 * 119.64785 * 359.97438 * 20 19 18 22 22 C 1.40555 * 121.29447 * 179.97438 * 21 20 19 23 23 C 1.36090 * 119.65000 * 180.02562 * 22 21 20 24 24 C 1.39378 * 121.00040 * 359.97438 * 23 22 21 25 25 C 1.36084 * 120.99271 * 0.02562 * 24 23 22 26 26 C 1.40496 * 120.17318 * 240.00051 * 17 15 12 27 27 H 0.97001 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08991 * 117.49892 * 145.02134 * 14 12 10 29 29 H 1.09000 * 117.49965 * 359.97438 * 14 12 10 30 30 H 1.08006 * 119.51075 * 359.95717 * 18 17 15 31 31 H 1.08002 * 119.50448 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.17599 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.17660 * 359.75152 * 22 21 20 34 34 H 1.07996 * 119.49480 * 180.02562 * 23 22 21 35 35 H 1.07997 * 119.50643 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.17716 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4402 0.6999 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1369 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4773 -0.0010 13 1 5.9841 -1.6909 0.5536 14 6 6.1517 -3.0082 -1.2648 15 6 6.1065 -3.8695 -0.0016 16 1 7.0359 -3.9993 0.5530 17 6 5.1787 -5.0570 -0.0015 18 6 4.2937 -5.2338 -1.0206 19 6 3.4285 -6.3258 -1.0379 20 6 3.4427 -7.2474 -0.0361 21 6 4.3424 -7.0983 1.0327 22 6 4.3862 -8.0286 2.0854 23 6 5.2707 -7.8513 3.1043 24 6 6.1369 -6.7594 3.1211 25 6 6.1230 -5.8385 2.1193 26 6 5.2228 -5.9876 1.0501 27 1 -0.4850 0.8400 0.0004 28 1 7.1109 -2.5711 -1.5419 29 1 5.5103 -3.3008 -2.0961 30 1 4.2614 -4.5168 -1.8277 31 1 2.7356 -6.4425 -1.8582 32 1 2.7665 -8.0890 -0.0630 33 1 3.7183 -8.8774 2.0880 34 1 5.3025 -8.5678 3.9117 35 1 6.8289 -6.6420 3.9418 36 1 6.8004 -4.9977 2.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730872425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:37 Heat of formation + Delta-G solvation = -14.850303 kcal Electronic energy + Delta-G solvation = -21364.982785 eV Core-core repulsion = 18165.854692 eV Total energy + Delta-G solvation = -3199.128093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85390 -40.84195 -38.79669 -36.95329 -36.60604 -34.48584 -33.33821 -31.12291 -29.96496 -28.18240 -25.34628 -24.92105 -23.98649 -23.50478 -21.67943 -20.59971 -20.07071 -18.91775 -18.25405 -17.72445 -17.16873 -16.73282 -16.56514 -15.89950 -15.74988 -15.08254 -15.00695 -14.60298 -14.49455 -14.37930 -14.21160 -13.84445 -13.60992 -13.28320 -12.79529 -12.71498 -12.45038 -12.40249 -12.24482 -11.88680 -11.82097 -11.63906 -11.54109 -11.39771 -10.96220 -10.82671 -10.35787 -9.34817 -8.54589 -8.48739 -6.39758 -0.30871 0.22433 1.10689 1.31610 1.32209 1.51828 1.56476 2.20371 2.26306 2.39999 2.79803 2.98511 3.26977 3.60773 3.74047 3.85481 3.98597 4.00976 4.10747 4.19011 4.26259 4.36975 4.46142 4.57623 4.60016 4.65859 4.84439 4.85943 4.94012 5.04406 5.14181 5.32885 5.42404 5.42863 5.51539 5.61751 5.71391 5.82193 5.91075 6.03007 6.22840 6.59741 6.85278 7.67094 8.58977 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004836 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.017369 B = 5788.203117 C = 6023.092490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.401 4.401 8 H 0.054 0.946 9 O -0.262 6.262 10 C 0.426 3.574 11 O -0.544 6.544 12 C -0.159 4.159 13 H 0.158 0.842 14 C -0.126 4.126 15 C -0.080 4.080 16 H 0.160 0.840 17 C -0.055 4.055 18 C -0.070 4.070 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.059 4.059 27 H 0.288 0.712 28 H 0.156 0.844 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.340 -10.943 2.240 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.477 4.477 8 H 0.072 0.928 9 O -0.172 6.172 10 C 0.273 3.727 11 O -0.438 6.438 12 C -0.178 4.178 13 H 0.176 0.824 14 C -0.163 4.163 15 C -0.098 4.098 16 H 0.177 0.823 17 C -0.056 4.056 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.059 4.059 27 H 0.098 0.902 28 H 0.174 0.826 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.956 -11.095 2.239 20.386 hybrid contribution -1.108 0.569 -0.216 1.264 sum 15.848 -10.526 2.023 19.133 Atomic orbital electron populations 1.69717 1.07631 1.30062 1.48803 1.25577 0.95957 1.02746 0.94370 0.85053 0.78942 0.75768 0.79775 1.18386 1.19179 1.17451 1.20256 0.77907 0.95518 1.54043 0.92833 1.83517 1.21730 1.33276 1.78679 1.23465 0.91757 0.81374 0.76140 1.90687 1.68137 1.35933 1.49026 1.21835 0.86529 1.01150 1.08262 0.82434 1.23386 1.03088 0.99766 0.90037 1.21315 0.99294 0.86221 1.02962 0.82283 1.18900 0.97712 0.94863 0.94078 1.20536 0.94310 0.95517 0.98491 1.20950 0.99187 0.95052 0.99934 1.21187 0.98887 1.00134 0.93702 1.18372 0.97222 0.96071 0.96652 1.21273 0.99782 0.98804 0.93645 1.21185 0.95742 0.98684 0.98829 1.21202 0.99592 0.94262 0.98910 1.21307 0.98591 1.00309 0.93712 1.18130 0.97346 0.94741 0.95653 0.90243 0.82576 0.89246 0.87949 0.85918 0.83995 0.83986 0.83304 0.83227 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.09 13.96 21.62 0.30 -56.79 16 2 C 0.01 0.75 5.49 84.87 0.47 1.21 16 3 Si 0.98 44.57 28.62 68.60 1.96 46.54 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.40 -25.25 10.10 67.94 0.69 -24.56 16 8 H 0.05 3.85 7.09 -2.91 -0.02 3.83 16 9 O -0.26 -14.29 8.58 14.89 0.13 -14.16 16 10 C 0.43 20.34 7.54 71.24 0.54 20.88 16 11 O -0.54 -29.11 10.95 20.79 0.23 -28.88 16 12 C -0.16 -5.08 6.30 -11.54 -0.07 -5.16 16 13 H 0.16 4.08 8.14 -2.38 -0.02 4.06 16 14 C -0.13 -3.07 9.57 30.58 0.29 -2.77 16 15 C -0.08 -2.16 5.48 -11.56 -0.06 -2.22 16 16 H 0.16 2.98 6.65 -2.39 -0.02 2.97 16 17 C -0.06 -1.89 4.39 -19.81 -0.09 -1.98 16 18 C -0.07 -2.63 6.12 22.04 0.13 -2.49 16 19 C -0.13 -4.72 9.95 22.04 0.22 -4.50 16 20 C -0.12 -3.91 9.77 22.33 0.22 -3.70 16 21 C -0.08 -2.68 5.74 -21.30 -0.12 -2.80 16 22 C -0.12 -3.00 9.77 22.34 0.22 -2.78 16 23 C -0.13 -2.75 9.95 22.04 0.22 -2.53 16 24 C -0.12 -2.66 9.95 22.04 0.22 -2.44 16 25 C -0.12 -3.17 9.35 22.33 0.21 -2.96 16 26 C -0.06 -1.92 5.74 -21.30 -0.12 -2.05 16 27 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 28 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 2.47 6.18 -2.39 -0.01 2.46 16 30 H 0.10 3.90 5.68 -2.91 -0.02 3.88 16 31 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.14 2.98 6.37 -2.91 -0.02 2.96 16 Total: -1.00 -79.35 305.49 6.68 -72.67 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.11 Total: 21.48 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 2.95 Total: -40.85 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: 0.36 Total: -43.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.96 Total: 46.54 kcal Total: -79.35 6.68 -72.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730872425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -79.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds