Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47365 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99949 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.09000 * 115.54983 * 34.41483 * 12 10 9 14 14 C 1.53003 * 117.49893 * 248.75150 * 12 10 9 15 15 C 1.52992 * 117.49949 * 180.09091 * 12 10 9 16 16 H 1.09002 * 117.50278 * 359.97438 * 15 12 10 17 17 C 1.50709 * 117.49753 * 214.97963 * 15 12 10 18 18 C 1.36126 * 120.17091 * 299.72300 * 17 15 12 19 19 C 1.39334 * 120.98792 * 179.67022 * 18 17 15 20 20 C 1.36127 * 120.98697 * 0.63650 * 19 18 17 21 21 C 1.40502 * 119.65370 * 359.67361 * 20 19 18 22 22 C 1.40540 * 121.28447 * 180.02562 * 21 20 19 23 23 C 1.36094 * 119.65412 * 180.02562 * 22 21 20 24 24 C 1.39382 * 120.98885 * 0.02562 * 23 22 21 25 25 C 1.36091 * 120.99432 * 359.97203 * 24 23 22 26 26 C 1.40494 * 120.17320 * 119.99677 * 17 15 12 27 27 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 28 28 H 1.09000 * 117.49955 * 359.97438 * 14 12 10 29 29 H 1.08996 * 117.50234 * 144.99716 * 14 12 10 30 30 H 1.07996 * 119.50741 * 359.97438 * 18 17 15 31 31 H 1.08002 * 119.50905 * 180.31091 * 19 18 17 32 32 H 1.07998 * 120.17666 * 179.65779 * 20 19 18 33 33 H 1.08005 * 120.17855 * 0.02562 * 22 21 20 34 34 H 1.08002 * 119.50626 * 180.02562 * 23 22 21 35 35 H 1.08002 * 119.49994 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.16833 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 1 0.4444 -4.8900 -0.5543 14 6 1.4988 -5.6918 1.2662 15 6 2.2693 -6.0849 0.0032 16 1 3.3487 -5.9332 0.0038 17 6 1.7824 -7.2881 -0.7625 18 6 0.6034 -7.8808 -0.4281 19 6 0.1338 -8.9898 -1.1288 20 6 0.8466 -9.5206 -2.1599 21 6 2.0713 -8.9399 -2.5300 22 6 2.8349 -9.4595 -3.5893 23 6 4.0168 -8.8711 -3.9194 24 6 4.4840 -7.7585 -3.2217 25 6 3.7718 -7.2280 -2.1906 26 6 2.5457 -7.8076 -1.8214 27 1 -0.4849 0.8401 -0.0004 28 1 2.0717 -5.2816 2.0979 29 1 0.6401 -6.3033 1.5430 30 1 0.0209 -7.4824 0.3894 31 1 -0.8073 -9.4381 -0.8464 32 1 0.4729 -10.3839 -2.6905 33 1 2.4856 -10.3214 -4.1386 34 1 4.6014 -9.2721 -4.7341 35 1 5.4255 -7.3108 -3.5038 36 1 4.1462 -6.3655 -1.6594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730872427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -12.768761 kcal Electronic energy + Delta-G solvation = -20574.934258 eV Core-core repulsion = 17375.896427 eV Total energy + Delta-G solvation = -3199.037831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62238 -39.17712 -37.38745 -35.99605 -34.76250 -32.40097 -32.11896 -30.30915 -29.08212 -25.99123 -24.17016 -23.60232 -23.10898 -22.55109 -20.23633 -19.26471 -17.77610 -17.48003 -17.31593 -16.42292 -16.26155 -15.01844 -14.81320 -14.39395 -14.32288 -14.23852 -13.70845 -13.63913 -13.49227 -13.10051 -12.82152 -12.08126 -11.86176 -11.78143 -11.53780 -11.44354 -11.25025 -11.03351 -10.74854 -10.60819 -10.47476 -10.41671 -10.10029 -9.81036 -9.54404 -9.04292 -8.61140 -8.57728 -7.77227 -6.41014 -4.08726 0.52042 1.01787 2.01706 2.95237 3.08806 3.18913 3.24943 3.36028 3.86021 4.03985 4.28885 4.39659 4.63686 4.78962 4.84688 4.94150 5.00018 5.05554 5.11395 5.15797 5.25911 5.38079 5.42986 5.47184 5.48230 5.82459 5.87073 5.98843 6.02322 6.19757 6.23536 6.25414 6.29330 6.50977 6.53396 6.70385 6.80218 6.86060 7.00929 7.39493 7.95128 8.70714 9.07560 9.87022 10.76984 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003785 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.680676 B = 7396.114672 C = 8023.105078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.383 4.383 8 H 0.096 0.904 9 O -0.208 6.208 10 C 0.425 3.575 11 O -0.556 6.556 12 C -0.125 4.125 13 H 0.126 0.874 14 C -0.146 4.146 15 C -0.099 4.099 16 H 0.128 0.872 17 C -0.026 4.026 18 C -0.125 4.125 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.049 4.049 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.044 4.044 27 H 0.270 0.730 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -18.654 -3.791 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.115 6.115 10 C 0.272 3.728 11 O -0.454 6.454 12 C -0.144 4.144 13 H 0.143 0.857 14 C -0.183 4.183 15 C -0.117 4.117 16 H 0.145 0.855 17 C -0.026 4.026 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.049 4.049 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.044 4.044 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.058 -18.450 -3.786 18.946 hybrid contribution 0.313 0.861 -0.115 0.923 sum 2.371 -17.589 -3.900 18.171 Atomic orbital electron populations 1.70005 1.06011 1.27689 1.46375 1.25346 0.95821 0.98863 0.96170 0.85672 0.79042 0.79719 0.78756 1.19857 1.20296 1.19079 1.21248 0.92389 0.79819 1.52430 0.88663 1.83860 1.39235 1.13198 1.75166 1.22053 0.86004 0.86188 0.78589 1.90538 1.15547 1.87926 1.51417 1.21661 1.01142 0.87804 1.03801 0.85657 1.23144 1.02474 1.01290 0.91350 1.21121 0.99402 0.91667 0.99519 0.85460 1.18996 0.94352 0.94765 0.94443 1.20791 0.96219 0.96568 1.00660 1.20802 0.99701 0.96218 0.95823 1.20959 0.94308 1.00198 0.98165 1.18062 0.95284 0.95321 0.96220 1.20960 0.95164 1.00158 0.96958 1.20852 0.96417 0.96267 0.99716 1.20873 1.00342 0.96646 0.96347 1.21274 0.93615 0.99367 0.97046 1.17904 0.95259 0.95413 0.95815 0.92059 0.87653 0.87558 0.85496 0.85959 0.85809 0.85811 0.86195 0.85966 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.38 -11.49 9.64 30.92 0.30 -11.19 16 8 H 0.10 2.86 6.86 -52.48 -0.36 2.51 16 9 O -0.21 -6.09 9.75 -20.69 -0.20 -6.29 16 10 C 0.43 10.71 7.69 36.01 0.28 10.99 16 11 O -0.56 -14.99 15.49 -19.05 -0.30 -15.29 16 12 C -0.12 -2.37 5.93 -91.77 -0.54 -2.92 16 13 H 0.13 2.26 8.14 -51.93 -0.42 1.84 16 14 C -0.15 -2.21 9.56 -26.69 -0.26 -2.47 16 15 C -0.10 -1.59 5.00 -91.73 -0.46 -2.05 16 16 H 0.13 2.17 6.17 -51.93 -0.32 1.85 16 17 C -0.03 -0.37 5.62 -104.53 -0.59 -0.96 16 18 C -0.12 -1.57 9.24 -39.93 -0.37 -1.93 16 19 C -0.11 -1.18 9.95 -39.93 -0.40 -1.58 16 20 C -0.12 -1.31 9.77 -39.49 -0.39 -1.70 16 21 C -0.05 -0.63 5.74 -106.83 -0.61 -1.24 16 22 C -0.11 -1.26 9.77 -39.48 -0.39 -1.64 16 23 C -0.11 -1.23 9.95 -39.93 -0.40 -1.63 16 24 C -0.12 -1.50 9.95 -39.93 -0.40 -1.90 16 25 C -0.10 -1.35 9.35 -39.48 -0.37 -1.72 16 26 C -0.04 -0.64 5.74 -106.84 -0.61 -1.25 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.11 1.29 6.17 -51.93 -0.32 0.97 16 30 H 0.13 1.39 5.95 -52.49 -0.31 1.08 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.98 6.37 -52.49 -0.33 1.64 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -33.90 314.58 -9.06 -42.96 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.74 Total: 4.35 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -5.29 Total: -22.09 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.76 Total: -24.82 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.50 Total: -21.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.90 -9.06 -42.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730872427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.188 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds