Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47365 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99949 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.09006 * 115.54583 * 325.58447 * 12 10 9 14 14 C 1.52990 * 117.50076 * 111.25189 * 12 10 9 15 15 C 1.52994 * 117.50178 * 179.91355 * 12 10 9 16 16 H 1.09000 * 117.49584 * 0.02562 * 15 12 10 17 17 C 1.50700 * 117.50185 * 145.01816 * 15 12 10 18 18 C 1.39373 * 119.50379 * 59.72484 * 17 15 12 19 19 C 1.36090 * 120.98793 * 179.77038 * 18 17 15 20 20 C 1.40543 * 119.65307 * 0.48850 * 19 18 17 21 21 C 1.40538 * 121.28258 * 179.75470 * 20 19 18 22 22 C 1.36092 * 119.65059 * 180.02562 * 21 20 19 23 23 C 1.39371 * 120.99148 * 359.97438 * 22 21 20 24 24 C 1.36094 * 120.98972 * 0.06480 * 23 22 21 25 25 C 1.40541 * 119.65222 * 359.91709 * 24 23 22 26 26 C 1.36092 * 119.50647 * 240.00465 * 17 15 12 27 27 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 28 28 H 1.09007 * 117.50448 * 214.97881 * 14 12 10 29 29 H 1.09002 * 117.49835 * 359.97438 * 14 12 10 30 30 H 1.08000 * 119.50670 * 0.02562 * 18 17 15 31 31 H 1.08003 * 120.17728 * 180.25967 * 19 18 17 32 32 H 1.08000 * 120.17581 * 0.02562 * 21 20 19 33 33 H 1.08002 * 119.50350 * 179.97438 * 22 21 20 34 34 H 1.08000 * 119.50739 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.17133 * 179.97438 * 24 23 22 36 36 H 1.08008 * 120.17188 * 359.94932 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 1 0.4447 -4.8896 0.5573 14 6 1.4979 -5.6924 -1.2635 15 6 2.2692 -6.0849 -0.0010 16 1 3.3486 -5.9332 -0.0023 17 6 1.7830 -7.2877 0.7657 18 6 0.5680 -7.8768 0.4202 19 6 0.1024 -8.9666 1.0891 20 6 0.8505 -9.5026 2.1513 21 6 0.3997 -10.6238 2.8686 22 6 1.1506 -11.1151 3.8918 23 6 2.3632 -10.5231 4.2405 24 6 2.8309 -9.4358 3.5689 25 6 2.0833 -8.9004 2.5061 26 6 2.5340 -7.7791 1.7887 27 1 -0.4849 0.8401 -0.0004 28 1 0.6390 -6.3044 -1.5391 29 1 2.0695 -5.2823 -2.0961 30 1 -0.0107 -7.4646 -0.3932 31 1 -0.8389 -9.4152 0.8076 32 1 -0.5378 -11.0932 2.6094 33 1 0.8017 -11.9766 4.4417 34 1 2.9401 -10.9330 5.0564 35 1 3.7721 -8.9873 3.8506 36 1 3.4718 -7.3100 2.0477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731277052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -14.801927 kcal Electronic energy + Delta-G solvation = -20157.181997 eV Core-core repulsion = 16958.056002 eV Total energy + Delta-G solvation = -3199.125995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55923 -39.26215 -37.68262 -35.71044 -34.57785 -32.80217 -32.12834 -30.14428 -29.37110 -26.01921 -24.17460 -23.62678 -23.13361 -21.97232 -20.93276 -19.43483 -17.75728 -17.33457 -17.12148 -16.77481 -15.99455 -14.93132 -14.85502 -14.73800 -14.36301 -14.28223 -13.75240 -13.62483 -13.45452 -13.08871 -12.80071 -12.41866 -11.92274 -11.73848 -11.55219 -11.42860 -11.23008 -11.12669 -10.80403 -10.55687 -10.47027 -10.35080 -10.08542 -9.91507 -9.75543 -9.05118 -8.57452 -8.50812 -7.89406 -6.40699 -4.08369 0.46683 0.91857 1.99144 2.82477 3.09100 3.19109 3.25276 3.37539 3.87015 4.01649 4.29630 4.39768 4.53997 4.73091 4.79003 4.85636 4.98508 5.04238 5.10887 5.15794 5.20788 5.29547 5.33589 5.38668 5.59751 5.68628 5.83991 5.87864 6.02879 6.13979 6.16623 6.24906 6.27342 6.37564 6.52094 6.67866 6.76152 6.81073 6.94087 7.39898 7.95605 8.71457 9.07911 9.87630 10.77335 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003073 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.734445 B = 9109.359521 C = 9314.235686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.208 6.208 10 C 0.425 3.575 11 O -0.556 6.556 12 C -0.127 4.127 13 H 0.125 0.875 14 C -0.147 4.147 15 C -0.098 4.098 16 H 0.127 0.873 17 C -0.038 4.038 18 C -0.109 4.109 19 C -0.107 4.107 20 C -0.057 4.057 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.048 4.048 26 C -0.100 4.100 27 H 0.270 0.730 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -20.497 4.121 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.115 6.115 10 C 0.272 3.728 11 O -0.454 6.454 12 C -0.146 4.146 13 H 0.143 0.857 14 C -0.184 4.184 15 C -0.116 4.116 16 H 0.145 0.855 17 C -0.038 4.038 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.057 4.057 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.048 4.048 26 C -0.118 4.118 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.186 -20.293 4.127 20.709 hybrid contribution 0.324 0.867 0.079 0.929 sum 0.510 -19.425 4.206 19.882 Atomic orbital electron populations 1.70005 1.06005 1.27681 1.46420 1.25348 0.95828 0.98869 0.96194 0.85670 0.79052 0.79719 0.78733 1.19865 1.20301 1.19084 1.21245 0.92382 0.79826 1.52401 0.88679 1.83860 1.39240 1.13204 1.75209 1.22061 0.85997 0.86200 0.78553 1.90542 1.15579 1.87928 1.51376 1.21626 1.01281 0.87858 1.03864 0.85695 1.23126 1.02534 1.01344 0.91421 1.21188 0.99296 0.91614 0.99471 0.85532 1.18899 0.94356 0.95068 0.95507 1.20868 0.95752 0.95934 1.00104 1.20972 0.99491 0.96672 0.95406 1.18110 0.94599 0.96219 0.96756 1.21011 0.99733 0.95664 0.95936 1.20812 0.95198 1.00257 0.97823 1.20820 0.96519 0.96549 1.00093 1.21063 0.99574 0.96403 0.95121 1.18077 0.94445 0.95839 0.96404 1.20878 1.00388 0.95399 0.95113 0.92065 0.87627 0.87736 0.85398 0.85509 0.85755 0.86232 0.86166 0.85553 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.50 9.64 30.92 0.30 -11.20 16 8 H 0.10 2.87 6.86 -52.48 -0.36 2.51 16 9 O -0.21 -6.11 9.75 -20.69 -0.20 -6.31 16 10 C 0.43 10.74 7.69 36.01 0.28 11.02 16 11 O -0.56 -15.13 15.49 -19.05 -0.30 -15.42 16 12 C -0.13 -2.40 5.92 -91.78 -0.54 -2.95 16 13 H 0.13 2.23 8.14 -51.93 -0.42 1.81 16 14 C -0.15 -2.22 9.55 -26.70 -0.26 -2.48 16 15 C -0.10 -1.54 5.52 -91.74 -0.51 -2.05 16 16 H 0.13 2.13 7.67 -51.93 -0.40 1.73 16 17 C -0.04 -0.53 5.58 -104.97 -0.59 -1.12 16 18 C -0.11 -1.34 9.19 -39.93 -0.37 -1.70 16 19 C -0.11 -1.21 9.77 -39.48 -0.39 -1.60 16 20 C -0.06 -0.68 5.74 -106.83 -0.61 -1.30 16 21 C -0.11 -1.05 9.77 -39.49 -0.39 -1.44 16 22 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 23 C -0.12 -1.15 9.95 -39.93 -0.40 -1.55 16 24 C -0.10 -1.12 9.77 -39.48 -0.39 -1.51 16 25 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 26 C -0.10 -1.34 9.42 -39.49 -0.37 -1.72 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.11 1.27 6.13 -51.93 -0.32 0.95 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.13 1.37 5.95 -52.49 -0.31 1.06 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -34.11 318.02 -9.20 -43.31 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.91 Total: 3.23 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -5.33 Total: -21.22 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.86 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.50 Total: -21.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.11 -9.20 -43.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731277052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.510 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds