Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47124 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47029 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46897 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 31 31 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 32 32 H 1.08998 * 109.47027 * 299.99710 * 20 19 18 33 33 H 1.08994 * 109.47323 * 59.99931 * 20 19 18 34 34 H 1.08989 * 109.47095 * 299.99669 * 21 20 19 35 35 H 1.08999 * 109.47231 * 60.00207 * 21 20 19 36 36 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6176 -7.1972 -1.8881 18 8 0.6629 -8.9978 -1.0337 19 6 0.4679 -9.4957 -2.3837 20 6 -0.2286 -10.8569 -2.3296 21 6 -0.4335 -11.3818 -3.7521 22 9 -1.0697 -12.6268 -3.7025 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 -0.1499 -8.7939 -2.9441 31 1 1.4350 -9.6013 -2.8753 32 1 0.3889 -11.5589 -1.7691 33 1 -1.1956 -10.7510 -1.8381 34 1 -1.0507 -10.6801 -4.3128 35 1 0.5338 -11.4879 -4.2431 36 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760640182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -151.438393 kcal Electronic energy + Delta-G solvation = -20727.013560 eV Core-core repulsion = 17091.193338 eV Total energy + Delta-G solvation = -3635.820222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.00399 -40.49858 -38.99830 -37.06631 -36.24769 -33.70035 -32.44693 -32.05811 -29.29260 -27.72723 -26.09910 -25.22862 -22.37144 -21.86783 -21.53208 -20.34233 -17.73486 -17.62584 -17.17884 -17.01921 -16.57234 -16.24065 -15.56434 -15.18835 -15.12668 -14.72791 -14.41448 -14.12332 -13.62945 -13.53849 -13.20872 -12.78783 -12.54378 -12.39722 -11.97300 -11.87099 -11.61746 -11.58049 -11.28786 -11.20971 -10.88044 -10.81904 -10.68346 -10.66279 -10.47196 -10.34062 -9.36189 -8.83923 -8.13832 -7.25143 -6.44425 -4.03713 1.92642 2.31316 2.35089 2.70276 3.13507 3.14636 3.17249 3.96659 4.20677 4.28822 4.37819 4.57102 4.63062 4.80055 4.82286 5.00033 5.09071 5.12373 5.16815 5.28022 5.46146 5.47764 5.60965 5.67682 5.72115 5.89469 6.13857 6.30190 6.37708 6.62747 6.87882 7.04728 7.20492 7.33617 7.41523 7.77850 7.84592 8.00161 9.01024 9.70865 10.73625 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.002825 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.128084 B = 9908.577679 C =10489.358034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.074 4.074 13 C -0.195 4.195 14 C -0.045 4.045 15 C -0.064 4.064 16 C 0.461 3.539 17 O -0.488 6.488 18 O -0.362 6.362 19 C 0.068 3.932 20 C -0.154 4.154 21 C 0.066 3.934 22 F -0.215 7.215 23 C -0.173 4.173 24 H 0.270 0.730 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -18.203 -2.097 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.101 4.101 16 C 0.302 3.698 17 O -0.373 6.373 18 O -0.280 6.280 19 C -0.007 4.007 20 C -0.192 4.192 21 C 0.011 3.989 22 F -0.196 7.196 23 C -0.192 4.192 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.659 -17.830 -2.459 18.075 hybrid contribution 0.530 0.826 -0.202 1.002 sum 2.189 -17.004 -2.661 17.350 Atomic orbital electron populations 1.70033 1.05958 1.27762 1.46091 1.25286 0.95846 0.98814 0.96555 0.85780 0.78694 0.79767 0.79179 1.19517 1.20280 1.19489 1.21275 0.91769 0.80819 1.52989 0.89128 1.83976 1.34234 1.11369 1.78556 1.19264 0.90259 0.87975 0.92478 1.21214 0.93834 0.99076 1.10502 1.20689 0.98480 0.92251 0.97850 1.20369 0.93172 0.97081 1.10780 1.18667 0.93358 0.91510 1.00988 1.20266 1.03658 0.95202 0.90967 1.23881 0.74275 0.78468 0.93129 1.90727 1.46557 1.59600 1.40445 1.86477 1.72733 1.36452 1.32296 1.22774 1.01211 0.94718 0.81947 1.22111 1.03272 0.96178 0.97638 1.21799 0.98336 0.81535 0.97268 1.92785 1.84328 1.44872 1.97608 1.19965 0.99164 0.89976 1.10078 0.91978 0.85490 0.87308 0.87739 0.87121 0.86973 0.90761 0.90896 0.89540 0.89433 0.90190 0.90284 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 10 C 0.15 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 12 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.20 -3.41 9.70 -39.54 -0.38 -3.79 16 14 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 15 C -0.06 -0.84 5.94 -29.03 -0.17 -1.01 16 16 C 0.46 6.69 7.95 36.01 0.29 6.98 16 17 O -0.49 -8.95 15.78 -18.75 -0.30 -9.24 16 18 O -0.36 -4.35 10.22 -39.24 -0.40 -4.75 16 19 C 0.07 0.65 5.47 37.16 0.20 0.85 16 20 C -0.15 -1.12 6.05 -26.73 -0.16 -1.28 16 21 C 0.07 0.42 7.55 37.16 0.28 0.70 16 22 F -0.21 -1.96 17.36 2.25 0.04 -1.92 16 23 C -0.17 -3.69 9.65 -39.40 -0.38 -4.07 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 25 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 26 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 27 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.11 1.27 8.08 -51.93 -0.42 0.85 16 30 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.41 8.14 -51.94 -0.42 -0.01 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -33.43 323.51 -6.00 -39.44 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.35 Total: 2.16 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.61 Total: -16.29 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.70 Total: -19.13 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.43 -6.00 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760640182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.003 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds