Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31794 * 119.07438 * 2 1 4 4 C 1.32655 * 120.99223 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 120.41899 * 179.97438 * 4 3 2 6 6 C 1.38337 * 119.16492 * 0.02562 * 4 3 2 7 7 C 1.39542 * 118.32114 * 359.97438 * 6 4 3 8 8 N 1.38605 * 120.52424 * 180.02562 * 7 6 4 9 9 N 1.40107 * 119.99464 * 180.02562 * 8 7 6 10 10 C 1.28017 * 119.99493 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99653 * 179.72063 * 10 9 8 12 12 H 1.08996 * 109.47563 * 0.27907 * 11 10 9 13 13 C 1.53010 * 109.46881 * 120.27732 * 11 10 9 14 14 C 1.53000 * 109.47550 * 240.27720 * 11 10 9 15 15 C 1.50695 * 109.47267 * 175.00521 * 14 11 10 16 16 H 1.08007 * 120.00278 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00064 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99861 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47050 * 90.00348 * 19 17 15 21 21 H 1.48498 * 109.47255 * 210.00312 * 19 17 15 22 22 H 1.48500 * 109.47121 * 330.00052 * 19 17 15 23 23 N 1.31725 * 119.07228 * 180.28266 * 2 1 3 24 24 H 1.09002 * 109.47258 * 89.99970 * 1 2 3 25 25 H 1.08997 * 109.46921 * 209.99753 * 1 2 3 26 26 H 1.08998 * 109.46890 * 329.99870 * 1 2 3 27 27 H 1.08007 * 120.84000 * 180.02562 * 6 4 3 28 28 H 0.97001 * 120.00540 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.00525 * 0.02562 * 10 9 8 30 30 H 1.08996 * 109.46838 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.46811 * 299.99835 * 13 11 10 32 32 H 1.08996 * 109.46879 * 59.99757 * 13 11 10 33 33 H 1.09010 * 109.46730 * 295.00085 * 14 11 10 34 34 H 1.08997 * 109.47006 * 54.99883 * 14 11 10 35 35 H 0.96999 * 119.99976 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1475 1.1519 0.0000 4 6 3.4733 1.1963 0.0005 5 17 4.3017 2.7219 -0.0002 6 6 4.1875 0.0115 0.0005 7 6 3.4773 -1.1896 0.0005 8 7 4.1467 -2.4033 0.0010 9 7 3.4224 -3.6027 0.0005 10 6 4.0407 -4.7236 0.0015 11 6 3.2618 -6.0137 0.0073 12 1 2.1943 -5.7936 0.0050 13 6 3.6169 -6.8295 -1.2376 14 6 3.6142 -6.8168 1.2610 15 6 2.7469 -8.0472 1.3297 16 1 2.0169 -8.2373 0.5567 17 6 2.8852 -8.9304 2.3794 18 7 3.7738 -8.6988 3.3209 19 14 1.8096 -10.4553 2.4649 20 1 2.4819 -11.5755 1.7590 21 1 1.5895 -10.8267 3.8858 22 1 0.5024 -10.1759 1.8182 23 7 2.1471 -1.1513 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 5.2676 0.0161 0.0013 28 1 5.1165 -2.4224 0.0018 29 1 5.1205 -4.7449 0.0032 30 1 3.0532 -7.7623 -1.2336 31 1 3.3657 -6.2573 -2.1307 32 1 4.6845 -7.0495 -1.2353 33 1 4.6625 -7.1130 1.2198 34 1 3.4446 -6.2027 2.1454 35 1 3.8709 -9.3200 4.0595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766021663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = 69.338661 kcal Electronic energy + Delta-G solvation = -18503.417453 eV Core-core repulsion = 15370.092720 eV Total energy + Delta-G solvation = -3133.324733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13019 -37.78577 -37.08664 -35.60424 -33.54563 -33.24625 -32.08560 -30.03535 -28.54044 -27.02099 -24.64923 -23.54502 -22.87456 -21.65974 -19.34981 -18.19027 -17.80220 -16.78430 -16.06612 -15.72888 -15.66366 -15.10556 -14.54756 -13.70653 -13.68710 -13.37625 -13.19153 -13.17567 -12.57661 -12.50849 -11.95102 -11.73032 -11.68713 -11.24468 -10.94215 -10.93035 -10.82865 -10.67013 -10.44239 -10.12273 -9.81979 -9.77062 -9.45256 -9.35896 -9.13136 -8.40961 -8.14102 -6.05651 -4.07749 0.68313 0.96481 1.35247 2.45624 2.50854 3.29735 3.36774 3.40009 3.61990 3.78073 4.13295 4.42508 4.58455 4.82448 5.07329 5.15516 5.30279 5.32016 5.45343 5.55433 5.68720 5.89155 6.03104 6.06584 6.14546 6.37627 6.67586 6.77649 6.89264 6.92871 6.99157 7.56342 7.65721 7.92168 7.94354 8.31622 8.38435 8.97488 9.56370 11.05814 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.002827 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.030441 B = 9900.710480 C =10205.651100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.376 3.624 3 N -0.559 5.559 4 C 0.256 3.744 5 Cl -0.021 7.021 6 C -0.285 4.285 7 C 0.479 3.521 8 N -0.564 5.564 9 N -0.248 5.248 10 C 0.107 3.893 11 C -0.039 4.039 12 H 0.081 0.919 13 C -0.128 4.128 14 C 0.034 3.966 15 C -0.516 4.516 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.535 5.535 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.394 0.606 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 17.911 -8.100 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.107 3.893 3 N -0.281 5.281 4 C 0.085 3.915 5 Cl 0.008 6.992 6 C -0.315 4.315 7 C 0.234 3.766 8 N -0.284 5.284 9 N -0.049 5.049 10 C -0.108 4.108 11 C -0.060 4.060 12 H 0.099 0.901 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.554 4.554 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 N -0.258 5.258 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.235 0.765 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.356 18.401 -7.944 20.045 hybrid contribution 2.061 -0.885 0.254 2.258 sum 1.705 17.515 -7.689 19.205 Atomic orbital electron populations 1.20618 0.84911 1.04561 1.04188 1.23064 0.97886 0.81175 0.87131 1.67654 1.07859 1.31082 1.21535 1.21432 0.89775 0.87299 0.93002 1.98418 1.75325 1.29396 1.96074 1.21652 1.02437 0.90508 1.16937 1.17923 0.88398 0.83963 0.86284 1.45559 1.06376 1.01124 1.75373 1.74670 1.23528 0.91310 1.15390 1.26798 0.98695 0.93496 0.91845 1.20385 0.98937 0.87632 0.99067 0.90074 1.21678 1.01577 1.00353 0.95011 1.19127 0.97319 0.93971 0.90030 1.21153 1.19900 1.06216 1.08158 0.92192 1.25005 0.95503 0.98250 0.95630 1.69956 1.34596 1.37042 1.11880 0.86584 0.80965 0.83207 0.77223 1.20664 1.21287 1.19754 1.68009 1.07270 1.29840 1.20714 0.89269 0.88921 0.89393 0.83098 0.76540 0.88148 0.90675 0.94589 0.93152 0.96114 0.96341 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.38 5.16 7.64 -157.25 -1.20 3.96 16 3 N -0.56 -7.59 10.33 -7.93 -0.08 -7.68 16 4 C 0.26 3.18 7.33 -17.16 -0.13 3.05 16 5 Cl -0.02 -0.21 29.15 -51.86 -1.51 -1.72 16 6 C -0.29 -3.37 9.84 -39.06 -0.38 -3.75 16 7 C 0.48 6.92 7.64 -154.68 -1.18 5.74 16 8 N -0.56 -7.96 6.40 31.25 0.20 -7.76 16 9 N -0.25 -4.24 10.99 32.67 0.36 -3.88 16 10 C 0.11 1.76 9.66 -13.87 -0.13 1.62 16 11 C -0.04 -0.74 2.75 -91.77 -0.25 -0.99 16 12 H 0.08 1.64 8.11 -51.93 -0.42 1.22 16 13 C -0.13 -2.14 8.99 37.16 0.33 -1.80 16 14 C 0.03 0.81 4.43 -27.89 -0.12 0.68 16 15 C -0.52 -13.65 8.41 -34.44 -0.29 -13.94 16 16 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 N -0.54 -8.48 9.93 -9.96 -0.10 -8.58 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.39 4.21 8.65 -182.59 -1.58 2.63 16 29 H 0.10 1.39 8.00 -52.49 -0.42 0.97 16 30 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -31.02 325.53 -9.26 -40.29 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.67 Total: -1.84 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.08 Total: -4.42 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 1.11 Total: -53.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.51 Total: -1.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.02 -9.26 -40.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.627 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds