Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00304 * 0.02562 * 10 9 8 12 12 O 1.34235 * 120.00207 * 180.02562 * 10 9 8 13 13 C 1.45201 * 116.99895 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46524 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46525 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00389 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99526 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99852 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47285 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47251 * 120.00115 * 19 17 15 22 22 H 1.48497 * 109.46889 * 240.00157 * 19 17 15 23 23 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 25 25 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 26 26 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 27 27 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 30 30 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 31 31 H 1.08997 * 109.47064 * 299.99293 * 13 12 10 32 32 H 1.08993 * 109.47506 * 59.99706 * 13 12 10 33 33 H 1.08997 * 109.46941 * 299.99451 * 14 13 12 34 34 H 1.09001 * 109.47248 * 60.00007 * 14 13 12 35 35 H 0.97005 * 119.99641 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.01400 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6039 -4.6084 0.0016 12 8 3.8942 -6.0086 -0.0016 13 6 4.8388 -7.1114 0.0000 14 6 4.0748 -8.4371 -0.0011 15 6 5.0551 -9.5817 -0.0001 16 1 6.1167 -9.3834 0.0016 17 6 4.5966 -10.8820 -0.0003 18 7 3.3038 -11.1234 -0.0019 19 14 5.8117 -12.3008 0.0017 20 1 7.1971 -11.7661 0.0027 21 1 5.6005 -13.1317 1.2141 22 1 5.6036 -13.1324 -1.2109 23 6 2.1970 -1.1972 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6554 2.1323 -0.0004 28 1 4.1167 2.1395 0.0010 29 1 2.8576 -3.5991 0.8882 30 1 2.8591 -3.5985 -0.8918 31 1 5.4670 -7.0529 -0.8888 32 1 5.4637 -7.0533 0.8911 33 1 3.4469 -8.4953 0.8880 34 1 3.4496 -8.4954 -0.8920 35 1 2.9813 -12.0382 -0.0016 36 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767526166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = -173.019214 kcal Electronic energy + Delta-G solvation = -20727.843869 eV Core-core repulsion = 17091.087832 eV Total energy + Delta-G solvation = -3636.756036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.85220 -41.83439 -40.93583 -38.84708 -37.69312 -35.48784 -33.37047 -32.53823 -31.49996 -30.03739 -27.52910 -26.92026 -24.21222 -23.05927 -22.69914 -22.08091 -19.55624 -18.84443 -18.37997 -18.17178 -18.16599 -17.66355 -17.10564 -17.09601 -16.48298 -16.22963 -15.54634 -15.25592 -15.04093 -14.84164 -14.40684 -14.38363 -14.24138 -13.92101 -13.27534 -13.06259 -12.96072 -12.85045 -12.64821 -12.64113 -12.55557 -12.18430 -12.01170 -11.89280 -11.57324 -11.56092 -11.37252 -10.63308 -9.86540 -9.22451 -8.29217 -6.42010 0.07302 0.20800 0.96777 0.97542 1.40687 1.41312 1.54894 2.30026 2.43132 2.51906 3.05579 3.22265 3.41196 3.73797 3.77416 3.90133 3.92044 4.13868 4.17613 4.19927 4.24317 4.46445 4.64360 4.72356 4.89932 4.92236 4.99234 5.16731 5.18840 5.31253 5.44332 5.44711 5.50390 5.64811 5.71320 6.04080 6.11689 6.56552 6.71539 7.27845 8.83504 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034747 B = 0.002660 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.639632 B =10523.099505 C =11297.687414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.123 4.123 4 C -0.109 4.109 5 C 0.026 3.974 6 F -0.154 7.154 7 C 0.080 3.920 8 O -0.321 6.321 9 C 0.074 3.926 10 C 0.456 3.544 11 O -0.533 6.533 12 O -0.353 6.353 13 C 0.090 3.910 14 C 0.032 3.968 15 C -0.551 4.551 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.186 4.186 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.269 0.731 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 26.089 0.021 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.127 4.127 5 C 0.007 3.993 6 F -0.133 7.133 7 C 0.035 3.965 8 O -0.236 6.236 9 C -0.001 4.001 10 C 0.300 3.700 11 O -0.422 6.422 12 O -0.269 6.269 13 C 0.017 3.983 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.205 4.205 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.185 0.815 28 H 0.180 0.820 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.258 25.912 0.020 27.196 hybrid contribution 1.159 -1.182 0.009 1.656 sum -7.098 24.730 0.029 25.728 Atomic orbital electron populations 1.20922 0.88005 1.04497 1.03828 1.20215 0.98174 0.91682 0.95183 1.21270 0.92278 0.99513 1.01070 1.21312 0.95710 0.95840 0.99839 1.17558 0.76739 0.93135 1.11917 1.91457 1.29827 1.97356 1.94685 1.19273 0.92269 0.83948 1.01039 1.86091 1.35802 1.12268 1.89416 1.22170 0.90904 0.78383 1.08601 1.23691 0.88443 0.85467 0.72435 1.90681 1.18690 1.87032 1.45842 1.86460 1.42515 1.14801 1.83160 1.23271 0.90742 0.83041 1.01214 1.18997 0.95783 0.88684 0.97098 1.21392 0.93472 0.91486 1.52543 0.91890 1.25925 0.97295 1.01846 0.94054 1.70086 1.14528 1.21439 1.50357 0.85291 0.78824 0.78195 0.78091 1.18867 1.19967 1.19980 1.21393 0.90307 1.01614 1.07167 0.89558 0.89444 0.90469 0.81462 0.82001 0.84098 0.84085 0.92096 0.92101 0.97061 0.97065 0.92253 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 71.24 0.71 0.03 16 2 C -0.05 -0.62 5.88 -19.87 -0.12 -0.74 16 3 C -0.12 -1.37 9.69 22.28 0.22 -1.15 16 4 C -0.11 -1.70 10.02 22.30 0.22 -1.48 16 5 C 0.03 0.63 7.31 22.46 0.16 0.79 16 6 F -0.15 -4.62 17.11 44.97 0.77 -3.85 16 7 C 0.08 1.89 6.69 22.53 0.15 2.05 16 8 O -0.32 -9.41 9.53 -73.99 -0.71 -10.12 16 9 C 0.07 1.74 5.33 71.23 0.38 2.12 16 10 C 0.46 15.96 8.03 71.23 0.57 16.53 16 11 O -0.53 -23.01 16.25 28.39 0.46 -22.55 16 12 O -0.35 -13.63 10.22 -51.47 -0.53 -14.16 16 13 C 0.09 4.04 5.41 71.99 0.39 4.43 16 14 C 0.03 1.67 5.35 29.85 0.16 1.83 16 15 C -0.55 -31.13 9.11 25.60 0.23 -30.90 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.01 0.45 5.46 84.65 0.46 0.91 16 18 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 19 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.19 -2.96 8.69 22.35 0.19 -2.77 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 25 H 0.09 0.27 8.08 -2.39 -0.02 0.25 16 26 H 0.08 0.41 8.08 -2.38 -0.02 0.39 16 27 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 28 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.14 2.32 7.66 -2.39 -0.02 2.31 16 30 H 0.14 2.32 7.66 -2.39 -0.02 2.31 16 31 H 0.06 2.72 8.13 -2.39 -0.02 2.70 16 32 H 0.06 2.72 8.13 -2.39 -0.02 2.70 16 33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 36 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 Total: -1.00 -74.33 324.90 7.14 -67.18 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.09 Total: 0.69 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 3.74 Total: -8.33 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.28 Total: -54.39 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.77 Total: -46.83 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.77 Total: -3.85 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.33 7.14 -67.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767526166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.835 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds