Wall clock time and date at job start Tue Mar 31 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35467 * 117.00050 * 2 1 4 4 N 1.32409 * 119.07471 * 359.97426 * 3 2 1 5 5 C 1.32578 * 120.88805 * 180.02562 * 4 3 2 6 6 O 1.35509 * 120.45365 * 179.97438 * 5 4 3 7 7 C 1.39666 * 119.09471 * 359.74924 * 5 4 3 8 8 C 1.39145 * 118.31820 * 0.49247 * 7 5 4 9 9 C 1.48374 * 120.48805 * 179.78510 * 8 7 5 10 10 O 1.21393 * 120.00042 * 359.71920 * 9 8 7 11 11 O 1.34638 * 120.00025 * 179.44077 * 9 8 7 12 12 C 1.45205 * 117.00324 * 180.27072 * 11 9 8 13 13 C 1.52994 * 109.47463 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47236 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47474 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00243 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99657 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99786 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46940 * 90.00112 * 19 17 15 21 21 H 1.48500 * 109.47036 * 209.99662 * 19 17 15 22 22 H 1.48495 * 109.47442 * 330.00079 * 19 17 15 23 23 N 1.32048 * 119.07773 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47419 * 300.00681 * 1 2 3 26 26 H 1.09008 * 109.47003 * 60.00538 * 1 2 3 27 27 H 0.96707 * 114.00016 * 90.00060 * 6 5 4 28 28 H 1.08000 * 120.84550 * 180.27223 * 7 5 4 29 29 H 1.08997 * 109.46894 * 300.00959 * 12 11 9 30 30 H 1.09010 * 109.46220 * 60.00105 * 12 11 9 31 31 H 1.08998 * 109.47242 * 300.00573 * 13 12 11 32 32 H 1.08996 * 109.46952 * 60.00482 * 13 12 11 33 33 H 1.08998 * 109.47304 * 300.00329 * 14 13 12 34 34 H 1.09010 * 109.46970 * 60.00129 * 14 13 12 35 35 H 0.97004 * 119.99536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3050 2.3057 -0.0005 5 6 1.8692 3.5054 -0.0010 6 8 1.1044 4.6241 -0.0021 7 6 3.2626 3.6006 0.0043 8 6 4.0047 2.4235 -0.0006 9 6 5.4877 2.4686 0.0000 10 8 6.0625 3.5378 -0.0005 11 8 6.1960 1.3236 0.0067 12 6 7.6431 1.4435 0.0129 13 6 8.2705 0.0481 0.0193 14 6 9.7952 0.1745 0.0265 15 6 10.4133 -1.1998 0.0321 16 1 9.7817 -2.0760 0.0303 17 6 11.7850 -1.3389 0.0396 18 7 12.5540 -0.2720 0.0413 19 14 12.5510 -3.0426 0.0460 20 1 12.7615 -3.4958 -1.3525 21 1 13.8561 -2.9959 0.7528 22 1 11.6445 -3.9904 0.7424 23 7 3.3636 1.2549 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.8821 4.9494 0.8811 28 1 3.7519 4.5634 0.0084 29 1 7.9667 1.9830 -0.8772 30 1 7.9585 1.9883 0.9028 31 1 7.9468 -0.4917 0.9091 32 1 7.9549 -0.4962 -0.8708 33 1 10.1192 0.7145 -0.8632 34 1 10.1105 0.7188 0.9168 35 1 13.5191 -0.3699 0.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770512490.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:43 Heat of formation + Delta-G solvation = -107.426577 kcal Electronic energy + Delta-G solvation = -20839.246213 eV Core-core repulsion = 17225.254448 eV Total energy + Delta-G solvation = -3613.991765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.93261 -40.25614 -39.13464 -37.77945 -36.65209 -34.08564 -33.77516 -31.73853 -31.61984 -28.03713 -27.40523 -25.84162 -24.38333 -23.23792 -21.66320 -20.39541 -19.66307 -19.15969 -18.06659 -17.22602 -16.83337 -16.73615 -16.37296 -16.12848 -15.83830 -15.53394 -14.96162 -14.45735 -14.37300 -13.75566 -13.36885 -12.84729 -12.40193 -12.25820 -12.20247 -11.92361 -11.67094 -11.41392 -11.18628 -11.05018 -10.96832 -10.64507 -10.57570 -10.45204 -9.91584 -9.72665 -9.53724 -9.50114 -9.15540 -8.37475 -6.02523 -4.05198 -0.09622 0.35900 1.89302 2.16851 2.44952 2.74046 3.24406 3.32688 3.38735 3.42709 3.87196 4.07720 4.33330 4.46107 4.60718 4.79714 4.86441 4.96654 5.15859 5.33689 5.34877 5.53079 5.53778 5.97335 6.04643 6.29095 6.53202 6.54907 6.73062 6.76004 6.98772 7.40651 7.61130 7.67831 7.71901 7.96063 8.37237 9.01092 9.59106 11.08985 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.002844 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.788909 B = 9841.868281 C =10822.954980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.279 6.279 3 C 0.525 3.475 4 N -0.573 5.573 5 C 0.404 3.596 6 O -0.467 6.467 7 C -0.220 4.220 8 C 0.209 3.791 9 C 0.520 3.480 10 O -0.485 6.485 11 O -0.325 6.325 12 C 0.065 3.935 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.479 5.479 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.414 0.586 28 H 0.174 0.826 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.982 7.994 1.676 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.179 6.179 3 C 0.222 3.778 4 N -0.314 5.314 5 C 0.214 3.786 6 O -0.275 6.275 7 C -0.244 4.244 8 C 0.063 3.937 9 C 0.360 3.640 10 O -0.371 6.371 11 O -0.239 6.239 12 C -0.008 4.008 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.208 5.208 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.275 0.725 28 H 0.191 0.809 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.915 7.152 1.092 26.906 hybrid contribution 0.585 0.227 0.427 0.759 sum -25.330 7.378 1.519 26.426 Atomic orbital electron populations 1.23084 0.75175 1.04057 1.02984 1.86200 1.23677 1.21513 1.86559 1.20222 0.85093 0.84069 0.88412 1.67445 1.43286 0.99258 1.21438 1.18835 0.86409 0.84560 0.88749 1.84744 1.71065 1.37039 1.34683 1.22798 0.93779 1.01573 1.06289 1.20277 0.92340 0.87570 0.93546 1.20365 0.86268 0.83261 0.74061 1.90880 1.70545 1.30943 1.44758 1.86692 1.23501 1.32212 1.81516 1.23719 0.72587 1.01939 1.02526 1.21786 0.98727 0.91814 1.02368 1.19057 0.86704 0.97796 0.97704 1.21181 0.91472 0.92365 1.50899 0.92354 1.25026 0.97381 0.96865 0.95200 1.69965 1.04403 1.28441 1.50633 0.86541 0.78620 0.84412 0.78138 1.20615 1.21218 1.19772 1.67648 1.07462 1.28750 1.16988 0.87365 0.91691 0.91647 0.72549 0.80880 0.91007 0.91006 0.91887 0.91882 0.96189 0.96179 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.36 101.05 1.05 1.33 16 2 O -0.28 -3.18 10.56 -18.09 -0.19 -3.37 16 3 C 0.52 6.56 8.48 -91.41 -0.78 5.79 16 4 N -0.57 -6.11 9.22 -14.79 -0.14 -6.25 16 5 C 0.40 3.73 7.83 -16.70 -0.13 3.59 16 6 O -0.47 -2.97 13.57 -18.22 -0.25 -3.22 16 7 C -0.22 -2.23 9.67 -38.71 -0.37 -2.60 16 8 C 0.21 2.78 6.78 -82.72 -0.56 2.21 16 9 C 0.52 8.10 7.97 34.90 0.28 8.38 16 10 O -0.48 -8.02 16.20 -19.18 -0.31 -8.33 16 11 O -0.33 -5.67 10.07 -40.32 -0.41 -6.08 16 12 C 0.06 1.18 5.47 37.15 0.20 1.39 16 13 C -0.11 -2.29 5.53 -26.74 -0.15 -2.43 16 14 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.48 -6.90 10.27 -11.36 -0.12 -7.02 16 24 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 27 H 0.41 0.34 9.06 45.56 0.41 0.76 16 28 H 0.17 1.46 7.72 -52.49 -0.41 1.05 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -34.14 321.68 -5.19 -39.33 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -3.33 Total: -5.07 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.01 Total: 4.63 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.48 Total: -39.38 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.16 Total: -21.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.14 -5.19 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770512490.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.101 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds