Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 119.99831 * 2 1 4 4 H 1.48496 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47139 * 299.99735 * 3 2 1 6 6 H 1.48501 * 109.47521 * 59.99695 * 3 2 1 7 7 C 1.39940 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00240 * 197.85260 * 7 2 1 9 9 C 1.41395 * 119.99850 * 17.86522 * 7 2 1 10 10 C 1.40715 * 120.24540 * 204.37532 * 9 7 2 11 11 C 1.37617 * 119.74823 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24734 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.74660 * 179.97438 * 12 11 10 14 14 O 1.45198 * 109.47110 * 90.00016 * 13 12 11 15 15 C 1.34720 * 117.00080 * 179.97438 * 14 13 12 16 16 O 1.21467 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.47723 * 119.99865 * 180.02562 * 15 14 13 18 18 C 1.39633 * 120.14681 * 180.02562 * 17 15 14 19 19 C 1.37945 * 119.84441 * 179.97438 * 18 17 15 20 20 C 1.38363 * 120.15268 * 0.02562 * 19 18 17 21 21 C 1.38373 * 120.30533 * 359.97438 * 20 19 18 22 22 C 1.37946 * 120.14846 * 0.02562 * 21 20 19 23 23 C 1.38635 * 120.50155 * 0.25068 * 12 11 10 24 24 C 1.37614 * 120.24736 * 359.44214 * 23 12 11 25 25 H 0.97006 * 119.99876 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.12495 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.87465 * 179.97438 * 11 10 9 28 28 H 1.08998 * 109.47453 * 329.99746 * 13 12 11 29 29 H 1.09007 * 109.47306 * 209.99546 * 13 12 11 30 30 H 1.07992 * 120.07346 * 359.70191 * 18 17 15 31 31 H 1.08000 * 119.92093 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.85233 * 179.97438 * 20 19 18 33 33 H 1.07995 * 119.92548 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.07936 * 179.97438 * 22 21 20 35 35 H 1.08004 * 119.87451 * 179.70988 * 23 12 11 36 36 H 1.08001 * 120.12788 * 180.27443 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3746 10 6 1.8258 -3.6498 0.0850 11 6 1.1799 -4.8067 -0.2869 12 6 0.0669 -4.7509 -1.1115 13 6 -0.6314 -6.0248 -1.5122 14 8 -1.6653 -6.3360 -0.5414 15 6 -2.3889 -7.4521 -0.7550 16 8 -2.1626 -8.1460 -1.7259 17 6 -3.4583 -7.8313 0.1910 18 6 -4.2099 -8.9878 -0.0272 19 6 -5.2066 -9.3363 0.8605 20 6 -5.4628 -8.5427 1.9645 21 6 -4.7218 -7.3953 2.1868 22 6 -3.7221 -7.0350 1.3072 23 6 -0.4052 -3.5326 -1.5749 24 6 0.2211 -2.3626 -1.2107 25 1 -0.4850 0.8401 -0.0004 26 1 2.6935 -3.6956 0.7265 27 1 1.5420 -5.7617 0.0643 28 1 0.0914 -6.8399 -1.5470 29 1 -1.0833 -5.8976 -2.4960 30 1 -4.0141 -9.6054 -0.8911 31 1 -5.7884 -10.2307 0.6932 32 1 -6.2446 -8.8199 2.6561 33 1 -4.9272 -6.7802 3.0503 34 1 -3.1448 -6.1391 1.4815 35 1 -1.2704 -3.5013 -2.2206 36 1 -0.1510 -1.4142 -1.5693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -49.951102 kcal Electronic energy + Delta-G solvation = -20085.753231 eV Core-core repulsion = 16885.103053 eV Total energy + Delta-G solvation = -3200.650178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29247 -38.71644 -37.62614 -35.99098 -33.87984 -31.64103 -31.10388 -30.62919 -29.37551 -27.26200 -24.64160 -23.40340 -22.61952 -21.09760 -20.70942 -20.04947 -17.93554 -17.40236 -16.90511 -16.02673 -15.95505 -15.36361 -14.85398 -14.71324 -14.17687 -13.81594 -13.79727 -13.60165 -12.92140 -12.83007 -12.40719 -12.24317 -12.03429 -11.76528 -11.74357 -11.24692 -11.19500 -10.99319 -10.85702 -10.46415 -10.29260 -10.14608 -9.70305 -9.48256 -9.23725 -9.16322 -9.14924 -7.57407 -7.46278 -6.87819 -4.47481 0.65594 1.21520 2.43077 2.67835 2.93313 2.99881 3.02645 3.07532 3.37598 3.72803 3.84994 4.49429 4.68454 4.77043 4.87240 5.04765 5.24581 5.35062 5.61047 5.64051 5.67207 5.71595 5.84529 6.03943 6.19413 6.24318 6.24971 6.30213 6.30986 6.70350 6.81849 6.86916 6.96585 7.17514 7.25649 7.50897 7.73101 7.95096 8.00203 8.05789 8.18340 8.53133 8.77689 8.85835 10.05887 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.027075 B = 0.003233 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.926382 B = 8658.877316 C = 9259.072724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.137 3.863 14 O -0.344 6.344 15 C 0.500 3.500 16 O -0.519 6.519 17 C -0.122 4.122 18 C -0.060 4.060 19 C -0.136 4.136 20 C -0.091 4.091 21 C -0.134 4.134 22 C -0.059 4.059 23 C -0.075 4.075 24 C -0.170 4.170 25 H 0.282 0.718 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.089 0.911 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 -10.526 2.817 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.238 4.238 13 C 0.065 3.935 14 O -0.261 6.261 15 C 0.346 3.654 16 O -0.410 6.410 17 C -0.123 4.123 18 C -0.078 4.078 19 C -0.154 4.154 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.077 4.077 23 C -0.094 4.094 24 C -0.190 4.190 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.863 -10.522 2.528 13.988 hybrid contribution 0.323 0.747 -0.029 0.814 sum -8.541 -9.775 2.498 13.219 Atomic orbital electron populations 1.69839 1.07680 1.29429 1.33955 1.25975 0.94762 1.01557 0.92127 0.86236 0.81030 0.80693 0.78673 1.18286 1.19585 1.19872 1.19708 0.98254 0.91220 1.39237 0.90126 1.17693 0.90789 0.92088 0.87874 1.20964 1.04125 0.92671 1.07196 1.20396 0.95099 0.96664 0.96003 1.18672 1.01281 0.91923 1.11893 1.21761 0.86388 0.95999 0.89375 1.86769 1.46021 1.40320 1.52957 1.21230 0.80919 0.79359 0.83934 1.90778 1.67883 1.52596 1.29746 1.19335 0.97996 0.98138 0.96830 1.21294 0.93216 0.94486 0.98797 1.21097 0.98526 1.00602 0.95202 1.21429 0.98382 0.94241 0.96844 1.21219 0.96373 0.97553 1.00067 1.21658 0.95629 0.98590 0.91872 1.20544 0.97670 0.92456 0.98710 1.21292 0.99692 0.96642 1.01338 0.90681 0.88714 0.89288 0.92000 0.91940 0.84652 0.85259 0.85556 0.85112 0.83919 0.89311 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.70 10.95 55.55 0.61 -19.09 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.09 5.57 -106.82 -0.60 2.49 16 10 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 12 C -0.24 -5.24 5.54 -104.33 -0.58 -5.81 16 13 C 0.14 2.65 5.59 36.00 0.20 2.85 16 14 O -0.34 -6.56 9.46 -40.55 -0.38 -6.95 16 15 C 0.50 8.72 7.90 34.61 0.27 9.00 16 16 O -0.52 -9.88 16.14 -19.24 -0.31 -10.19 16 17 C -0.12 -1.75 5.87 -104.98 -0.62 -2.36 16 18 C -0.06 -0.72 9.60 -39.17 -0.38 -1.09 16 19 C -0.14 -1.28 10.03 -39.64 -0.40 -1.68 16 20 C -0.09 -0.81 10.04 -39.49 -0.40 -1.20 16 21 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 22 C -0.06 -0.77 9.62 -39.17 -0.38 -1.14 16 23 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 24 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.06 1.16 8.07 -51.93 -0.42 0.75 16 30 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.92 7.61 -52.49 -0.40 1.52 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 36 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -28.53 321.40 -9.50 -38.03 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.05 Total: 5.99 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -5.18 Total: -25.65 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.69 Total: -17.14 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.53 -9.50 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds