Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48499 * 109.47526 * 85.01422 * 3 2 1 5 5 H 1.48500 * 109.47295 * 205.01840 * 3 2 1 6 6 H 1.48505 * 109.47127 * 325.01749 * 3 2 1 7 7 C 1.39948 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99967 * 196.23213 * 7 2 1 9 9 C 1.41395 * 119.99841 * 16.22666 * 7 2 1 10 10 C 1.40736 * 120.24286 * 27.15489 * 9 7 2 11 11 C 1.37598 * 119.74710 * 179.97438 * 10 9 7 12 12 C 1.38663 * 120.24354 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.50347 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24804 * 359.67500 * 13 12 11 15 15 C 1.50703 * 120.13078 * 180.32157 * 14 13 12 16 16 C 1.50700 * 109.47142 * 265.30650 * 15 14 13 17 17 O 1.20832 * 119.99636 * 359.97438 * 16 15 14 18 18 O 1.34261 * 120.00200 * 179.97438 * 16 15 14 19 19 C 1.35929 * 116.99991 * 175.12745 * 18 16 15 20 20 C 1.38728 * 120.05445 * 256.94675 * 19 18 16 21 21 C 1.38139 * 119.94472 * 179.79027 * 20 19 18 22 22 C 1.38264 * 120.05689 * 0.48805 * 21 20 19 23 23 C 1.38274 * 120.10804 * 359.74145 * 22 21 20 24 24 C 1.38139 * 120.05300 * 0.02834 * 23 22 21 25 25 H 0.96999 * 120.00205 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.12851 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.87703 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.74650 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.87623 * 179.97438 * 13 12 11 30 30 H 1.09005 * 109.47043 * 25.30251 * 15 14 13 31 31 H 1.08999 * 109.47575 * 145.30276 * 15 14 13 32 32 H 1.08002 * 120.02785 * 0.02562 * 20 19 18 33 33 H 1.08005 * 119.97473 * 180.25367 * 21 20 19 34 34 H 1.08003 * 119.94934 * 179.72364 * 22 21 20 35 35 H 1.08000 * 119.96662 * 179.97438 * 23 22 21 36 36 H 1.08006 * 120.02250 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1074 1.3947 5 1 3.5884 1.4122 -0.5921 6 1 1.4962 2.6200 -0.8027 7 6 2.0081 -1.2119 0.0005 8 1 3.0558 -1.2304 0.2620 9 6 1.3434 -2.4122 -0.3411 10 6 0.2262 -2.3851 -1.1966 11 6 -0.4126 -3.5593 -1.5228 12 6 0.0402 -4.7661 -1.0115 13 6 1.1395 -4.8047 -0.1681 14 6 1.7983 -3.6433 0.1659 15 6 2.9976 -3.6892 1.0773 16 6 2.5603 -3.4312 2.4962 17 8 1.3945 -3.2302 2.7420 18 8 3.4662 -3.4247 3.4872 19 6 3.0226 -3.0856 4.7265 20 6 3.2822 -1.8215 5.2356 21 6 2.8266 -1.4778 6.4936 22 6 2.1210 -2.3959 7.2493 23 6 1.8651 -3.6581 6.7461 24 6 2.3145 -4.0049 5.4867 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1284 -1.4462 -1.5956 27 1 -1.2703 -3.5409 -2.1787 28 1 -0.4675 -5.6829 -1.2725 29 1 1.4833 -5.7503 0.2247 30 1 3.4646 -4.6721 1.0141 31 1 3.7143 -2.9262 0.7736 32 1 3.8368 -1.1053 4.6474 33 1 3.0249 -0.4924 6.8888 34 1 1.7695 -2.1268 8.2345 35 1 1.3141 -4.3736 7.3385 36 1 2.1147 -4.9911 5.0942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776727404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -34.930404 kcal Electronic energy + Delta-G solvation = -21208.411866 eV Core-core repulsion = 18008.413034 eV Total energy + Delta-G solvation = -3199.998832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76069 -38.51952 -37.56322 -36.00528 -33.65209 -31.93268 -30.91178 -30.01500 -29.51974 -27.13286 -25.14096 -23.14271 -22.63221 -21.02539 -20.81688 -19.42249 -17.75872 -17.25547 -16.53848 -16.13615 -16.01645 -15.41848 -14.63889 -14.38493 -14.31173 -13.66795 -13.45518 -13.37056 -13.06570 -12.63269 -12.41616 -11.87774 -11.71209 -11.57945 -11.52528 -11.22425 -11.16259 -10.99382 -10.75677 -10.45488 -10.36594 -9.84482 -9.55297 -9.42889 -9.19173 -8.90909 -8.57184 -7.41870 -7.36629 -6.76188 -4.39007 1.24024 1.42695 2.68646 2.84634 2.94403 3.05091 3.08703 3.22395 3.39195 3.91115 3.99460 4.63583 4.94766 4.96191 5.10747 5.31517 5.42743 5.58757 5.66626 5.78345 5.88379 6.02693 6.17704 6.23252 6.28777 6.40033 6.46869 6.50223 6.51421 6.68668 6.84288 7.06557 7.20438 7.22065 7.34705 7.58077 7.84508 7.96352 8.06433 8.25184 8.54296 8.58860 8.84849 8.93795 10.19002 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.006380 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.140830 B = 4387.844064 C = 5710.995346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.274 1.274 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.134 3.866 10 C -0.159 4.159 11 C -0.101 4.101 12 C -0.241 4.241 13 C -0.074 4.074 14 C -0.200 4.200 15 C -0.035 4.035 16 C 0.455 3.545 17 O -0.463 6.463 18 O -0.312 6.312 19 C 0.098 3.902 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.124 4.124 25 H 0.280 0.720 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -2.785 8.703 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.199 1.199 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.131 3.869 10 C -0.179 4.179 11 C -0.120 4.120 12 C -0.260 4.260 13 C -0.093 4.093 14 C -0.201 4.201 15 C -0.072 4.072 16 C 0.298 3.702 17 O -0.344 6.344 18 O -0.230 6.230 19 C 0.057 3.943 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.142 4.142 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.227 -2.563 8.792 10.545 hybrid contribution 0.079 0.836 0.165 0.856 sum 5.307 -1.726 8.957 10.553 Atomic orbital electron populations 1.69829 1.07537 1.29138 1.34656 1.25859 0.94695 1.01134 0.92276 0.86406 0.80859 0.81079 0.79100 1.19604 1.18274 1.19925 1.19507 0.97253 0.91115 1.41499 0.90492 1.17334 0.90611 0.91137 0.87768 1.21268 0.99349 0.96625 1.00628 1.20710 0.98388 0.93440 0.99464 1.20311 1.01680 0.96345 1.07703 1.20317 0.95645 0.95652 0.97651 1.18956 1.01394 0.94461 1.05303 1.19979 0.99172 1.03167 0.84882 1.24854 0.84563 0.73551 0.87267 1.90703 1.18950 1.41805 1.82978 1.84666 1.42446 1.80426 1.15434 1.18591 0.97946 0.93322 0.84465 1.21240 1.01070 0.94708 0.96965 1.20998 0.98053 0.99572 0.93947 1.21160 0.99408 0.93877 1.00064 1.20983 0.99577 0.96846 0.95189 1.21327 0.97854 0.99866 0.95193 0.90889 0.86595 0.89420 0.89466 0.89497 0.89271 0.87646 0.85161 0.85473 0.85841 0.85622 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.79 11.04 55.55 0.61 -20.17 16 2 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 3 Si 0.90 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.04 8.44 -37.74 -0.32 -12.36 16 8 H 0.08 1.88 6.38 -52.48 -0.34 1.54 16 9 C 0.13 3.52 5.55 -106.83 -0.59 2.93 16 10 C -0.16 -4.18 8.68 -38.87 -0.34 -4.52 16 11 C -0.10 -2.43 10.02 -39.66 -0.40 -2.82 16 12 C -0.24 -5.49 10.05 -39.29 -0.39 -5.88 16 13 C -0.07 -1.68 9.66 -39.66 -0.38 -2.06 16 14 C -0.20 -4.73 4.43 -103.91 -0.46 -5.19 16 15 C -0.03 -0.69 5.46 -29.03 -0.16 -0.85 16 16 C 0.46 9.70 7.83 36.01 0.28 9.98 16 17 O -0.46 -11.72 15.53 -18.75 -0.29 -12.01 16 18 O -0.31 -5.87 10.03 -23.62 -0.24 -6.11 16 19 C 0.10 1.73 5.13 -39.22 -0.20 1.53 16 20 C -0.12 -1.93 9.99 -39.44 -0.39 -2.32 16 21 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 22 C -0.13 -1.57 10.04 -39.56 -0.40 -1.96 16 23 C -0.11 -1.42 10.04 -39.60 -0.40 -1.82 16 24 C -0.12 -1.97 9.58 -39.44 -0.38 -2.34 16 25 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 26 H 0.12 3.12 6.31 -52.48 -0.33 2.79 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.09 1.45 8.06 -51.93 -0.42 1.04 16 31 H 0.11 1.99 6.49 -51.93 -0.34 1.66 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -30.57 317.61 -9.11 -39.68 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.94 Total: 7.78 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -5.02 Total: -27.62 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.61 Total: -20.17 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.53 Total: -18.12 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.57 -9.11 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776727404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.752 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds