Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99869 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00049 * 3 2 1 6 6 H 1.48500 * 109.47305 * 149.99604 * 3 2 1 7 7 C 1.37878 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99352 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47319 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47246 * 180.02562 * 11 10 9 13 13 C 1.34231 * 117.00269 * 180.02562 * 12 11 10 14 14 O 1.20832 * 119.99399 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00288 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47069 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.96996 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47197 * 60.00435 * 9 7 2 25 25 H 1.08997 * 109.47383 * 299.99649 * 9 7 2 26 26 H 1.09010 * 109.46793 * 60.00271 * 10 9 7 27 27 H 1.09001 * 109.47574 * 300.00434 * 10 9 7 28 28 H 1.08997 * 109.46943 * 59.99997 * 11 10 9 29 29 H 1.09001 * 109.47096 * 300.00658 * 11 10 9 30 30 H 1.09005 * 109.47250 * 59.99680 * 15 13 12 31 31 H 1.09007 * 109.47222 * 299.99932 * 15 13 12 32 32 H 1.08994 * 109.46921 * 60.00192 * 16 15 13 33 33 H 1.08994 * 109.47207 * 299.99884 * 16 15 13 34 34 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 35 35 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 36 36 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 37 37 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 8 2.4236 -6.0908 0.0005 13 6 1.9106 -7.3312 -0.0005 14 8 0.7126 -7.4894 -0.0014 15 6 2.8285 -8.5263 -0.0005 16 6 1.9951 -9.8094 -0.0011 17 6 2.9272 -11.0228 -0.0005 18 6 2.1064 -12.2867 -0.0017 19 6 1.6996 -12.9113 1.1647 20 6 0.9802 -14.0204 0.9868 21 16 0.7777 -14.3226 -0.7340 22 6 1.7171 -12.8884 -1.1267 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8898 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6045 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8531 -5.0451 0.8896 30 1 3.4568 -8.5019 0.8899 31 1 3.4579 -8.5010 -0.8901 32 1 1.3666 -9.8340 -0.8913 33 1 1.3661 -9.8345 0.8886 34 1 3.5553 -10.9980 0.8899 35 1 3.5566 -10.9979 -0.8901 36 1 1.9459 -12.5295 2.1445 37 1 0.5793 -14.6361 1.7784 38 1 1.9406 -12.5448 -2.1259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783264826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -88.053115 kcal Electronic energy + Delta-G solvation = -18248.749749 eV Core-core repulsion = 15181.891295 eV Total energy + Delta-G solvation = -3066.858454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24552 -38.77435 -36.58496 -34.43631 -33.97554 -31.72233 -30.46289 -28.14718 -26.87025 -24.26151 -23.15378 -22.07839 -20.50099 -20.18166 -19.03793 -17.97479 -17.32653 -16.63364 -16.48838 -15.93341 -15.45559 -15.01895 -14.47812 -13.97115 -13.87584 -13.43944 -13.18513 -13.02276 -12.73375 -12.25578 -12.24261 -11.99211 -11.87582 -11.85647 -11.63845 -11.04995 -10.97157 -10.92871 -10.66180 -10.62588 -10.36604 -10.31493 -9.71573 -9.49731 -9.16430 -9.11330 -8.67948 -8.38924 -6.03633 -4.06689 0.69977 1.36148 1.68273 2.36696 2.38151 2.95499 3.30855 3.36993 3.40571 4.43092 4.45516 4.56753 4.74871 4.77309 4.90107 5.08936 5.12802 5.27488 5.32238 5.35002 5.38975 5.46761 5.58829 5.64978 5.68219 5.81156 6.02594 6.03022 6.12969 6.20115 6.53521 6.54496 6.87130 6.99413 7.60250 7.71345 7.94434 7.97416 8.35956 8.99605 9.57526 11.07817 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.063045 B = 0.001945 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.022593 B =14391.577689 C =14558.364505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.360 6.360 13 C 0.454 3.546 14 O -0.514 6.514 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.061 4.061 18 C -0.098 4.098 19 C -0.129 4.129 20 C -0.212 4.212 21 S 0.085 5.915 22 C -0.210 4.210 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -29.004 0.136 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.277 6.277 13 C 0.297 3.703 14 O -0.403 6.403 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.160 4.160 20 C -0.347 4.347 21 S 0.349 5.651 22 C -0.346 4.346 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.440 -30.028 -0.715 30.363 hybrid contribution 0.848 2.058 0.822 2.373 sum 5.287 -27.970 0.107 28.466 Atomic orbital electron populations 1.69967 1.06086 1.26759 1.50541 1.25042 0.94895 0.99392 0.95220 0.86535 0.79794 0.83204 0.78125 1.20621 1.21193 1.19815 1.21174 0.93122 0.90683 1.50978 0.92421 1.19056 0.93857 0.90781 0.97674 1.21764 0.99910 0.91061 1.01929 1.23482 0.91226 0.83710 1.02086 1.86497 1.42719 1.15338 1.83124 1.23662 0.88748 0.85191 0.72676 1.90664 1.17172 1.86931 1.45487 1.21402 0.98076 0.89924 1.05837 1.21402 0.97570 0.90792 1.04327 1.20345 0.96444 0.89948 1.03315 1.18928 1.01598 0.98509 0.91993 1.20145 1.00427 0.95856 0.99560 1.25606 1.07117 1.03046 0.98976 1.84308 1.53140 1.26639 1.01009 1.25501 1.06237 1.00289 1.02552 0.92892 0.96257 0.96230 0.92159 0.92173 0.91586 0.91589 0.87721 0.87743 0.90803 0.90740 0.90466 0.90611 0.84133 0.81914 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 11 C 0.07 1.27 5.47 37.16 0.20 1.47 16 12 O -0.36 -5.99 10.22 -39.26 -0.40 -6.39 16 13 C 0.45 6.67 7.96 36.00 0.29 6.96 16 14 O -0.51 -9.14 15.73 -18.76 -0.30 -9.43 16 15 C -0.11 -1.06 5.81 -27.88 -0.16 -1.22 16 16 C -0.10 -0.92 4.49 -26.73 -0.12 -1.04 16 17 C -0.06 -0.41 5.47 -27.88 -0.15 -0.56 16 18 C -0.10 -0.79 5.06 -106.25 -0.54 -1.33 16 19 C -0.13 -1.01 9.98 -41.21 -0.41 -1.42 16 20 C -0.21 -1.57 11.23 29.04 0.33 -1.24 16 21 S 0.09 0.65 23.34 -107.50 -2.51 -1.86 16 22 C -0.21 -1.67 10.98 29.04 0.32 -1.35 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 29 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.08 0.44 8.13 -51.93 -0.42 0.01 16 35 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -32.34 342.73 -9.15 -41.49 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.88 Total: -4.11 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.95 Total: -15.25 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.70 Total: -15.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.34 -9.15 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783264826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.563 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds