Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99869 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00049 * 3 2 1 6 6 H 1.48500 * 109.47305 * 149.99604 * 3 2 1 7 7 C 1.37878 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99352 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47319 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47246 * 180.02562 * 11 10 9 13 13 C 1.34231 * 117.00269 * 180.02562 * 12 11 10 14 14 O 1.20832 * 119.99399 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00288 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47069 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46776 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.96996 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47197 * 60.00435 * 9 7 2 25 25 H 1.08997 * 109.47383 * 299.99649 * 9 7 2 26 26 H 1.09010 * 109.46793 * 60.00271 * 10 9 7 27 27 H 1.09001 * 109.47574 * 300.00434 * 10 9 7 28 28 H 1.08997 * 109.46943 * 59.99997 * 11 10 9 29 29 H 1.09001 * 109.47096 * 300.00658 * 11 10 9 30 30 H 1.09005 * 109.47250 * 59.99680 * 15 13 12 31 31 H 1.09007 * 109.47222 * 299.99932 * 15 13 12 32 32 H 1.08994 * 109.46921 * 60.00192 * 16 15 13 33 33 H 1.08994 * 109.47207 * 299.99884 * 16 15 13 34 34 H 1.08994 * 109.47301 * 60.00348 * 17 16 15 35 35 H 1.09003 * 109.46866 * 299.99784 * 17 16 15 36 36 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 37 37 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 8 2.4236 -6.0908 0.0005 13 6 1.9106 -7.3312 -0.0005 14 8 0.7126 -7.4894 -0.0014 15 6 2.8285 -8.5263 -0.0005 16 6 1.9951 -9.8094 -0.0011 17 6 2.9272 -11.0228 -0.0005 18 6 2.1064 -12.2867 -0.0017 19 6 1.6996 -12.9113 1.1647 20 6 0.9802 -14.0204 0.9868 21 16 0.7777 -14.3226 -0.7340 22 6 1.7171 -12.8884 -1.1267 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8898 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6045 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8531 -5.0451 0.8896 30 1 3.4568 -8.5019 0.8899 31 1 3.4579 -8.5010 -0.8901 32 1 1.3666 -9.8340 -0.8913 33 1 1.3661 -9.8345 0.8886 34 1 3.5553 -10.9980 0.8899 35 1 3.5566 -10.9979 -0.8901 36 1 1.9459 -12.5295 2.1445 37 1 0.5793 -14.6361 1.7784 38 1 1.9406 -12.5448 -2.1259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783264826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -104.500694 kcal Electronic energy + Delta-G solvation = -18249.462970 eV Core-core repulsion = 15181.891295 eV Total energy + Delta-G solvation = -3067.571674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49368 -39.35956 -37.91849 -35.93180 -35.19419 -33.67814 -31.14885 -29.29443 -28.29450 -25.51262 -24.44960 -22.88212 -22.16683 -21.39065 -19.61798 -18.79866 -18.56471 -18.25210 -17.84517 -17.16034 -16.49702 -16.33476 -15.95762 -15.20446 -14.69779 -14.51838 -14.11117 -13.95503 -13.87446 -13.76125 -13.53432 -13.31994 -12.83144 -12.68228 -12.62133 -12.50525 -12.43262 -12.28617 -12.06895 -11.78462 -11.65836 -11.53818 -11.39429 -11.38146 -11.19762 -10.57896 -9.68247 -9.26437 -8.22184 -6.33930 0.13151 0.80619 1.12136 1.21482 1.41465 1.43175 1.54314 1.67102 1.87945 2.41419 3.11571 3.66627 3.84672 3.98324 4.01663 4.06924 4.17605 4.30575 4.39645 4.49315 4.55343 4.66640 4.69539 4.76533 4.79423 4.92991 4.94401 5.06431 5.07753 5.21366 5.35791 5.45002 5.57694 5.58489 5.62874 5.64280 5.79542 6.18529 6.74429 6.82439 7.35631 8.90061 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.063045 B = 0.001945 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.022593 B =14391.577689 C =14558.364505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.077 3.923 12 O -0.360 6.360 13 C 0.450 3.550 14 O -0.550 6.550 15 C -0.104 4.104 16 C -0.097 4.097 17 C -0.053 4.053 18 C -0.109 4.109 19 C -0.143 4.143 20 C -0.218 4.218 21 S 0.074 5.926 22 C -0.223 4.223 23 H 0.264 0.736 24 H -0.005 1.005 25 H -0.004 1.004 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.180 0.820 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -29.442 0.313 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.276 6.276 13 C 0.295 3.705 14 O -0.441 6.441 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.092 4.092 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.353 4.353 21 S 0.338 5.662 22 C -0.358 4.358 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.171 0.829 37 H 0.198 0.802 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.749 -30.492 -0.540 31.235 hybrid contribution 0.084 2.105 0.770 2.243 sum 6.833 -28.387 0.231 29.199 Atomic orbital electron populations 1.70106 1.07917 1.27936 1.51465 1.26047 0.95824 1.03636 0.94613 0.85360 0.78634 0.77994 0.78531 1.19717 1.20848 1.18466 1.21629 0.93786 0.91820 1.50829 0.91557 1.18947 0.94313 0.92636 0.95364 1.21455 0.98678 0.90378 1.02609 1.23076 0.91038 0.84014 1.01513 1.86493 1.41926 1.15735 1.83467 1.24856 0.89218 0.85390 0.71022 1.90658 1.19144 1.87106 1.47193 1.21590 0.97270 0.86741 1.08470 1.21326 0.97692 0.91771 1.02716 1.20320 0.95931 0.88011 1.04974 1.19174 1.01863 0.99078 0.92062 1.20409 1.00621 0.96079 1.00219 1.25903 1.06942 1.03274 0.99148 1.84319 1.53325 1.26897 1.01642 1.25756 1.06340 1.00407 1.03281 0.92691 0.98626 0.98586 0.91381 0.91391 0.92258 0.92243 0.84838 0.84915 0.92554 0.92404 0.88744 0.89002 0.82874 0.80227 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.31 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.90 5.53 30.60 0.17 -3.73 16 11 C 0.08 2.90 5.47 71.98 0.39 3.30 16 12 O -0.36 -11.48 10.22 -51.42 -0.53 -12.00 16 13 C 0.45 12.65 7.96 71.23 0.57 13.21 16 14 O -0.55 -19.62 15.73 21.95 0.35 -19.27 16 15 C -0.10 -1.61 5.81 29.85 0.17 -1.44 16 16 C -0.10 -1.56 4.49 30.60 0.14 -1.42 16 17 C -0.05 -0.57 5.47 29.85 0.16 -0.41 16 18 C -0.11 -1.60 5.06 -20.92 -0.11 -1.70 16 19 C -0.14 -2.04 9.98 21.22 0.21 -1.83 16 20 C -0.22 -2.99 11.23 66.72 0.75 -2.24 16 21 S 0.07 1.09 23.34 -56.49 -1.32 -0.23 16 22 C -0.22 -3.30 10.98 66.72 0.73 -2.57 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 24 H 0.00 -0.27 8.14 -2.38 -0.02 -0.28 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 29 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 30 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.09 0.73 8.13 -2.39 -0.02 0.71 16 35 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.41 342.73 5.87 -64.54 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.02 Total: 5.46 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.03 Total: -27.68 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.18 Total: -31.28 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.32 Total: -0.23 kcal Total: -70.41 5.87 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783264826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.962 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds