Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38273 * 119.94134 * 2 1 4 4 C 1.38096 * 120.09459 * 180.23517 * 3 2 1 5 5 C 1.38919 * 119.97659 * 359.51659 * 4 3 2 6 6 N 1.39893 * 120.05510 * 180.22945 * 5 4 3 7 7 C 1.34771 * 119.99693 * 41.91041 * 6 5 4 8 8 S 1.71203 * 120.00358 * 5.53874 * 7 6 5 9 9 N 1.34782 * 119.99808 * 185.53315 * 7 6 5 10 10 C 1.46495 * 119.99911 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47464 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99892 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00410 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00377 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47289 * 59.99763 * 16 14 12 18 18 H 1.48500 * 109.47290 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46958 * 299.99744 * 16 14 12 20 20 C 1.38815 * 119.88859 * 0.25842 * 5 4 3 21 21 C 1.38358 * 119.89986 * 359.97438 * 20 5 4 22 22 F 1.35106 * 119.98820 * 180.02562 * 21 20 5 23 23 H 1.08998 * 109.47104 * 270.22463 * 1 2 3 24 24 H 1.09001 * 109.47157 * 30.22734 * 1 2 3 25 25 H 1.09000 * 109.47340 * 150.22619 * 1 2 3 26 26 H 1.08000 * 119.95062 * 0.02562 * 3 2 1 27 27 H 1.07996 * 120.01020 * 179.79093 * 4 3 2 28 28 H 0.96996 * 119.99852 * 221.90835 * 6 5 4 29 29 H 0.96997 * 119.99788 * 0.02562 * 9 7 6 30 30 H 1.09005 * 109.47202 * 300.00221 * 10 9 7 31 31 H 1.09002 * 109.47570 * 59.99948 * 10 9 7 32 32 H 1.08997 * 109.47311 * 300.00434 * 11 10 9 33 33 H 1.09010 * 109.46831 * 59.99780 * 11 10 9 34 34 H 0.96995 * 120.00243 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.05406 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5781 1.2019 -0.0049 5 6 4.2754 0.0004 0.0003 6 7 5.6744 0.0023 0.0002 7 6 6.3471 0.8752 0.7760 8 16 5.4958 1.8841 1.8662 9 7 7.6901 0.9538 0.6936 10 6 8.4213 1.9023 1.5373 11 6 9.9198 1.7909 1.2492 12 6 10.6721 2.7670 2.1166 13 1 10.1351 3.4029 2.8048 14 6 12.0458 2.8483 2.0315 15 7 12.6997 2.0744 1.1930 16 14 12.9783 4.0577 3.1072 17 1 12.7253 3.7459 4.5368 18 1 14.4327 3.9498 2.8274 19 1 12.5184 5.4387 2.8129 20 6 3.5818 -1.2020 0.0050 21 6 2.1982 -1.2000 0.0050 22 9 1.5213 -2.3693 0.0101 23 1 -0.3633 0.0040 1.0276 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3634 -0.8920 -0.5103 26 1 1.6554 2.1325 0.0004 27 1 4.1157 2.1385 -0.0083 28 1 6.1601 -0.6247 -0.5582 29 1 8.1723 0.3824 0.0757 30 1 8.0844 2.9160 1.3206 31 1 8.2348 1.6739 2.5867 32 1 10.2571 0.7773 1.4654 33 1 10.1060 2.0196 0.1997 34 1 13.6661 2.1312 1.1333 35 1 4.1212 -2.1376 0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783758367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = -30.452857 kcal Electronic energy + Delta-G solvation = -18562.157200 eV Core-core repulsion = 15406.628927 eV Total energy + Delta-G solvation = -3155.528273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88830 -41.19877 -39.36878 -36.98333 -35.14019 -33.05923 -31.61332 -31.44917 -27.79529 -26.52238 -25.19057 -23.75978 -23.43685 -22.32101 -19.89881 -19.42708 -18.51261 -17.50322 -17.35691 -16.75866 -16.65945 -16.55364 -16.24666 -16.17888 -15.68349 -14.89056 -14.63311 -14.30912 -14.19591 -14.05843 -13.39584 -13.33142 -13.11625 -12.79646 -12.62575 -12.54806 -12.37491 -12.23858 -12.12925 -11.69460 -11.46305 -10.78647 -10.55288 -9.91835 -9.42930 -9.03033 -8.33703 -8.26583 -6.36261 -0.23732 0.23814 0.48572 0.80580 1.36804 1.44219 1.44497 1.52952 2.35820 2.49756 2.58935 3.09545 3.32054 3.74502 3.87487 4.08482 4.17905 4.25847 4.33574 4.43569 4.68580 4.80130 4.81201 4.85324 4.94472 5.08291 5.19909 5.22208 5.34562 5.45144 5.50363 5.51443 5.72148 5.78063 5.98376 6.12138 6.29441 6.77074 7.33455 8.84865 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.047782 B = 0.002891 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.858956 B = 9682.123728 C =10058.512436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.088 4.088 5 C 0.144 3.856 6 N -0.619 5.619 7 C 0.574 3.426 8 S -0.704 6.704 9 N -0.649 5.649 10 C 0.147 3.853 11 C 0.022 3.978 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.154 4.154 21 C 0.084 3.916 22 F -0.141 7.141 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.133 0.867 28 H 0.427 0.573 29 H 0.415 0.585 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 -7.315 -7.304 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.110 4.110 5 C 0.050 3.950 6 N -0.247 5.247 7 C 0.211 3.789 8 S -0.576 6.576 9 N -0.274 5.274 10 C 0.024 3.976 11 C -0.016 4.016 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.176 4.176 21 C 0.064 3.936 22 F -0.120 7.120 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.269 0.731 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.613 -6.632 -6.556 22.624 hybrid contribution 1.784 -0.787 -0.443 1.999 sum -18.829 -7.419 -6.999 21.414 Atomic orbital electron populations 1.20797 0.88356 1.04268 1.03524 1.20272 0.98449 0.91390 1.01573 1.20950 0.92645 0.98168 0.98882 1.21464 0.95071 0.97936 0.96507 1.17079 0.80419 0.93939 1.03540 1.41946 1.05400 1.35207 1.42134 1.21851 0.85407 0.86052 0.85546 1.93516 1.68664 1.51147 1.44265 1.45308 1.02957 1.38972 1.40133 1.21736 0.91315 0.91074 0.93433 1.19182 0.88795 0.96856 0.96770 1.21376 0.92359 1.21631 1.22875 0.91981 1.25808 0.98722 0.97634 0.96752 1.70031 1.08603 1.40263 1.37702 0.85545 0.77186 0.79415 0.79242 1.19412 1.20778 1.19295 1.20841 0.92848 0.98253 1.05616 1.17191 0.89291 0.81298 1.05804 1.91469 1.80038 1.46221 1.94224 0.90195 0.89061 0.91043 0.82602 0.84903 0.73143 0.74625 0.91010 0.91327 0.97105 0.96977 0.92541 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.83 71.24 0.70 -0.77 16 2 C -0.12 -2.14 5.89 -19.80 -0.12 -2.25 16 3 C -0.09 -1.70 9.69 22.24 0.22 -1.48 16 4 C -0.09 -2.10 7.86 22.40 0.18 -1.93 16 5 C 0.14 3.24 5.91 38.16 0.23 3.46 16 6 N -0.62 -13.07 5.33 -190.00 -1.01 -14.08 16 7 C 0.57 16.76 7.74 179.05 1.39 18.15 16 8 S -0.70 -26.77 25.06 -56.49 -1.42 -28.18 16 9 N -0.65 -18.95 5.56 -350.17 -1.95 -20.90 16 10 C 0.15 5.66 5.07 86.38 0.44 6.10 16 11 C 0.02 1.00 5.09 29.85 0.15 1.16 16 12 C -0.54 -28.93 9.11 25.60 0.23 -28.69 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.01 0.53 5.46 84.65 0.46 1.00 16 15 N -0.93 -52.48 13.29 21.45 0.28 -52.19 16 16 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 C -0.15 -3.05 9.95 22.44 0.22 -2.82 16 21 C 0.08 1.72 7.24 22.36 0.16 1.88 16 22 F -0.14 -2.93 16.47 44.97 0.74 -2.18 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 25 H 0.07 0.89 7.63 -2.39 -0.02 0.87 16 26 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 27 H 0.13 3.72 6.27 -4.54 -0.03 3.69 16 28 H 0.43 5.74 8.84 -92.71 -0.82 4.92 16 29 H 0.41 9.62 8.49 -92.71 -0.79 8.84 16 30 H 0.07 2.93 7.99 -2.38 -0.02 2.91 16 31 H 0.07 2.84 7.99 -2.39 -0.02 2.82 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -66.58 317.29 2.45 -64.14 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.49 Total: 15.07 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.26 Total: -6.20 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.67 Total: -87.18 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.74 Total: -2.18 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -26.77 SS G_CDS: -1.42 Total: -28.18 kcal Total: -66.58 2.45 -64.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783758367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.684 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds