Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35996 * 117.00420 * 2 1 4 4 C 1.38520 * 120.03218 * 0.28139 * 3 2 1 5 5 C 1.38819 * 119.92848 * 180.23071 * 4 3 2 6 6 N 1.39925 * 120.00164 * 179.78861 * 5 4 3 7 7 C 1.46504 * 119.99958 * 5.75834 * 6 5 4 8 8 C 1.50707 * 109.46867 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99656 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99738 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99790 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99938 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46856 * 90.00140 * 12 10 8 14 14 H 1.48497 * 109.47094 * 210.00535 * 12 10 8 15 15 H 1.48505 * 109.47384 * 330.00406 * 12 10 8 16 16 C 1.38859 * 119.99943 * 359.76246 * 5 4 3 17 17 N 1.48009 * 119.96807 * 180.02562 * 16 5 4 18 18 O 1.21797 * 119.99828 * 173.83837 * 17 16 5 19 19 O 1.21797 * 119.99776 * 353.84650 * 17 16 5 20 20 C 1.38213 * 120.06932 * 359.97438 * 16 5 4 21 21 C 1.38531 * 120.07073 * 0.02562 * 20 16 5 22 22 O 1.36095 * 120.00177 * 179.97438 * 21 20 16 23 23 C 1.42900 * 116.99637 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47450 * 299.99860 * 1 2 3 25 25 H 1.09002 * 109.47028 * 59.99706 * 1 2 3 26 26 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.03502 * 0.02562 * 4 3 2 28 28 H 0.97001 * 120.00105 * 185.75453 * 6 5 4 29 29 H 1.08995 * 109.46605 * 299.99860 * 7 6 5 30 30 H 1.08993 * 109.47121 * 60.00308 * 7 6 5 31 31 H 0.97002 * 119.99940 * 179.97438 * 11 10 8 32 32 H 1.07997 * 119.96582 * 180.02562 * 20 16 5 33 33 H 1.09002 * 109.46861 * 60.00596 * 23 22 21 34 34 H 1.08993 * 109.47655 * 299.99985 * 23 22 21 35 35 H 1.08998 * 109.46762 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3739 0.0059 5 6 1.9253 3.6096 0.0010 6 7 1.1654 4.7845 0.0025 7 6 -0.2918 4.7143 0.1364 8 6 -0.8665 6.1072 0.1084 9 1 -0.2117 6.9594 0.0020 10 6 -2.2282 6.2935 0.2187 11 7 -3.0254 5.2556 0.3488 12 14 -2.9404 8.0200 0.1848 13 1 -3.2527 8.3991 -1.2167 14 1 -4.1831 8.0588 0.9968 15 1 -1.9517 8.9746 0.7472 16 6 3.3121 3.6796 -0.0047 17 7 3.9858 4.9975 -0.0093 18 8 5.1972 5.0625 0.0988 19 8 3.3287 6.0169 -0.1212 20 6 4.0641 2.5200 -0.0051 21 6 3.4359 1.2853 -0.0003 22 8 4.1777 0.1443 -0.0012 23 6 5.5988 0.2945 -0.0078 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2141 2.3187 0.0109 28 1 1.6035 5.6455 -0.0851 29 1 -0.7049 4.1346 -0.6889 30 1 -0.5471 4.2345 1.0812 31 1 -3.9833 5.3866 0.4268 32 1 5.1426 2.5764 -0.0092 33 1 5.9100 0.8455 0.8797 34 1 5.9022 0.8418 -0.9002 35 1 6.0680 -0.6892 -0.0074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784608348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -45.463888 kcal Electronic energy + Delta-G solvation = -22244.847960 eV Core-core repulsion = 18633.543099 eV Total energy + Delta-G solvation = -3611.304861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80106 -40.49588 -38.52225 -37.71970 -36.18228 -34.71439 -32.67399 -31.03443 -29.48649 -28.01438 -27.30358 -26.79377 -24.85756 -23.22825 -22.09916 -21.24150 -19.20459 -18.45363 -18.30489 -17.24915 -17.08865 -16.51274 -16.20990 -16.11874 -15.31684 -15.29589 -14.94991 -14.54522 -14.01870 -13.70542 -13.62740 -12.94528 -12.50314 -12.38526 -12.14505 -11.70412 -11.50206 -11.37227 -11.25379 -11.07134 -11.00443 -10.94933 -10.77501 -10.59432 -10.27667 -9.56947 -9.52568 -8.74524 -8.52131 -7.05473 -6.35397 -4.40815 0.31905 1.46817 1.76480 1.93871 3.08510 3.18325 3.22376 3.24831 3.29422 3.56266 3.89738 4.27082 4.57105 4.87774 4.98136 5.03294 5.05363 5.10265 5.16449 5.22593 5.40236 5.40893 5.51909 5.57856 5.69942 5.96190 6.29022 6.73407 6.83590 6.89756 7.08168 7.36134 7.45664 7.71280 7.84969 8.09234 8.40965 8.69148 9.26571 10.75214 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.005272 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.275904 B = 5309.866740 C = 6857.603537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.297 6.297 3 C 0.209 3.791 4 C -0.266 4.266 5 C 0.307 3.693 6 N -0.680 5.680 7 C 0.236 3.764 8 C -0.542 4.542 9 H 0.069 0.931 10 C 0.067 3.933 11 N -0.891 5.891 12 Si 0.907 3.093 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.270 1.270 16 C -0.152 4.152 17 N 0.067 4.933 18 O -0.194 6.194 19 O -0.207 6.207 20 C -0.071 4.071 21 C 0.029 3.971 22 O -0.304 6.304 23 C 0.025 3.975 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.418 0.582 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.155 0.845 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -11.213 -0.722 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.209 6.209 3 C 0.159 3.841 4 C -0.290 4.290 5 C 0.184 3.816 6 N -0.311 5.311 7 C 0.116 3.884 8 C -0.580 4.580 9 H 0.087 0.913 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.734 3.266 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.246 4.246 17 N 0.568 4.432 18 O -0.402 6.402 19 O -0.404 6.404 20 C -0.091 4.091 21 C -0.019 4.019 22 O -0.218 6.218 23 C -0.071 4.071 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.179 0.821 28 H 0.266 0.734 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.124 -12.049 -0.683 15.130 hybrid contribution -0.222 1.799 -0.037 1.813 sum 8.902 -10.250 -0.720 13.595 Atomic orbital electron populations 1.23253 0.77323 1.04315 1.02674 1.86175 1.22133 1.25496 1.87049 1.18272 0.88826 0.84987 0.91971 1.20631 1.01407 0.88615 1.18379 1.17423 0.87209 0.89349 0.87612 1.47099 1.09852 1.06038 1.68131 1.19454 0.72755 0.99136 0.97095 1.21160 0.92579 0.91663 1.52592 0.91298 1.24906 0.96576 0.98005 0.94222 1.69920 1.04476 1.29895 1.48521 0.86335 0.78573 0.83378 0.78319 1.20276 1.20916 1.19431 1.19891 0.90543 0.82492 1.31700 1.43241 1.00665 1.02515 0.96777 1.94435 0.96860 1.93841 1.55076 1.94214 1.64383 1.25199 1.56592 1.20303 1.00820 0.88651 0.99356 1.17441 0.87943 0.85304 1.11191 1.86176 1.18334 1.26974 1.90347 1.23055 0.78954 1.03724 1.01328 0.91679 0.91763 0.87819 0.82104 0.73423 0.95209 0.95181 0.92297 0.82751 0.92713 0.92785 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.19 10.28 -34.33 -0.35 -4.54 16 3 C 0.21 3.22 6.70 -39.14 -0.26 2.96 16 4 C -0.27 -4.47 8.30 -39.26 -0.33 -4.79 16 5 C 0.31 5.79 6.63 -83.72 -0.56 5.23 16 6 N -0.68 -14.53 5.61 -59.78 -0.34 -14.86 16 7 C 0.24 5.63 4.71 -5.19 -0.02 5.61 16 8 C -0.54 -14.25 9.28 -34.44 -0.32 -14.57 16 9 H 0.07 1.80 7.60 -52.49 -0.40 1.40 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 12 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 C -0.15 -2.74 6.86 -79.73 -0.55 -3.28 16 17 N 0.07 1.30 4.45 34.07 0.15 1.45 16 18 O -0.19 -3.62 18.46 -29.46 -0.54 -4.16 16 19 O -0.21 -4.31 15.69 -29.46 -0.46 -4.77 16 20 C -0.07 -1.07 8.54 -39.48 -0.34 -1.41 16 21 C 0.03 0.43 6.70 -39.14 -0.26 0.16 16 22 O -0.30 -4.09 10.28 -34.65 -0.36 -4.45 16 23 C 0.02 0.22 9.81 101.05 0.99 1.22 16 24 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.16 2.65 4.97 -52.48 -0.26 2.39 16 28 H 0.42 9.15 4.75 -41.27 -0.20 8.95 16 29 H 0.03 0.73 7.73 -51.93 -0.40 0.33 16 30 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.16 1.97 5.85 -52.49 -0.31 1.67 16 33 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 34 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.28 305.98 -5.88 -35.16 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.56 Total: 5.63 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.75 Total: -6.02 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.55 Total: -36.86 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.72 Total: -17.92 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.28 -5.88 -35.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784608348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.302 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds