Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46774 * 2 1 4 4 H 1.08996 * 109.47650 * 304.78029 * 3 2 1 5 5 C 1.50702 * 109.47159 * 184.77668 * 3 2 1 6 6 H 1.08004 * 120.00398 * 245.45316 * 5 3 2 7 7 C 1.37876 * 119.99644 * 65.45423 * 5 3 2 8 8 N 1.31515 * 120.00478 * 9.49240 * 7 5 3 9 9 Si 1.86801 * 120.00081 * 189.49185 * 7 5 3 10 10 H 1.48504 * 109.47218 * 84.99365 * 9 7 5 11 11 H 1.48493 * 109.47251 * 204.99496 * 9 7 5 12 12 H 1.48509 * 109.47019 * 324.99545 * 9 7 5 13 13 O 1.45207 * 109.47420 * 64.78152 * 3 2 1 14 14 C 1.34897 * 116.99590 * 270.00088 * 13 3 2 15 15 O 1.21623 * 120.00113 * 359.97438 * 14 13 3 16 16 C 1.46488 * 119.99617 * 179.97438 * 14 13 3 17 17 C 1.38003 * 126.26457 * 180.02562 * 16 14 13 18 18 C 1.39792 * 106.96921 * 179.97438 * 17 16 14 19 19 N 1.48017 * 126.07504 * 179.97438 * 18 17 16 20 20 O 1.21792 * 120.00207 * 0.03005 * 19 18 17 21 21 O 1.21797 * 119.99594 * 179.75022 * 19 18 17 22 22 C 1.35489 * 107.84528 * 0.22952 * 18 17 16 23 23 N 1.34955 * 108.98145 * 359.62661 * 22 18 17 24 24 C 1.46502 * 125.63174 * 180.14156 * 23 22 18 25 25 H 1.08996 * 109.47467 * 59.99974 * 1 2 3 26 26 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46991 * 299.99630 * 1 2 3 28 28 H 1.08998 * 109.46991 * 240.00370 * 2 1 3 29 29 H 1.09000 * 109.47200 * 119.99631 * 2 1 3 30 30 H 0.96999 * 120.00581 * 180.02562 * 8 7 5 31 31 H 1.07999 * 126.50744 * 0.02562 * 17 16 14 32 32 H 1.07995 * 125.50499 * 179.74260 * 22 18 17 33 33 H 1.09001 * 109.47548 * 270.26828 * 24 23 22 34 34 H 1.08994 * 109.47221 * 30.27338 * 24 23 22 35 35 H 1.09007 * 109.47115 * 150.26919 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 3.5423 1.4442 -0.1183 6 1 4.1479 1.8097 0.6979 7 6 4.1437 0.9793 -1.2686 8 7 3.4144 0.7104 -2.3295 9 14 5.9945 0.7314 -1.3203 10 1 6.3300 -0.6078 -0.7735 11 1 6.4674 0.8253 -2.7248 12 1 6.6573 1.7799 -0.5037 13 8 1.6513 2.0933 1.2385 14 6 0.4622 2.7301 1.2487 15 8 -0.2303 2.7412 0.2489 16 6 0.0050 3.4084 2.4639 17 6 -1.1820 4.0951 2.6181 18 6 -1.2070 4.5774 3.9299 19 7 -2.2918 5.3750 4.5448 20 8 -3.2781 5.6665 3.8926 21 8 -2.2002 5.7354 5.7047 22 6 -0.0593 4.1898 4.5367 23 7 0.6808 3.4772 3.6617 24 6 1.9897 2.8801 3.9387 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8375 0.3829 -3.1386 31 1 -1.9467 4.2329 1.8679 32 1 0.2175 4.4133 5.5564 33 1 2.7745 3.5972 3.6980 34 1 2.0517 2.6140 4.9938 35 1 2.1167 1.9846 3.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -49.226839 kcal Electronic energy + Delta-G solvation = -22183.769633 eV Core-core repulsion = 18572.301598 eV Total energy + Delta-G solvation = -3611.468035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.47806 -41.42416 -39.51297 -36.42338 -36.10066 -33.88328 -33.40912 -31.68929 -30.35629 -28.03380 -27.47070 -25.51402 -23.96762 -22.90268 -21.31250 -20.48605 -19.90627 -18.85996 -18.38985 -17.48294 -16.91366 -16.57194 -16.45511 -16.13423 -15.37712 -15.12058 -14.60550 -14.01942 -13.44018 -13.17844 -13.01679 -12.91983 -12.69441 -12.21467 -11.75927 -11.53072 -11.49733 -11.44337 -11.20648 -11.13399 -11.07002 -10.83331 -10.45209 -10.21501 -9.98820 -9.66588 -9.61913 -9.08334 -8.97869 -8.63699 -6.37235 -4.42975 0.30471 1.02609 1.34710 2.16113 2.33978 3.12638 3.13448 3.20553 3.20597 3.27789 4.16897 4.18771 4.40714 4.56041 4.93439 4.96213 5.01845 5.22655 5.28357 5.68492 5.76577 6.00895 6.06177 6.16183 6.22186 6.37193 6.51401 6.62223 6.72123 6.90302 6.95184 7.37039 7.45323 7.63713 7.77197 7.89105 8.28662 8.65111 9.21853 10.71530 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.004116 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.274227 B = 6801.255707 C = 7308.901619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.058 0.942 5 C -0.531 4.531 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.354 6.354 14 C 0.525 3.475 15 O -0.489 6.489 16 C -0.006 4.006 17 C -0.058 4.058 18 C -0.138 4.138 19 N 0.068 4.932 20 O -0.165 6.165 21 O -0.180 6.180 22 C 0.110 3.890 23 N -0.389 5.389 24 C 0.056 3.944 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.269 0.731 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 2.879 12.415 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.075 0.925 5 C -0.568 4.568 6 H 0.087 0.913 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.197 1.197 13 O -0.271 6.271 14 C 0.368 3.632 15 O -0.377 6.377 16 C -0.116 4.116 17 C -0.082 4.082 18 C -0.230 4.230 19 N 0.584 4.416 20 O -0.380 6.380 21 O -0.391 6.391 22 C -0.036 4.036 23 N -0.062 5.062 24 C -0.084 4.084 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.215 0.785 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.027 2.210 11.580 11.962 hybrid contribution 0.631 0.013 -0.030 0.632 sum -1.396 2.223 11.549 11.844 Atomic orbital electron populations 1.21888 0.97949 0.99468 1.01064 1.21944 0.93045 0.99158 1.02462 1.20821 0.95303 0.88512 0.78434 0.92467 1.20899 0.89084 1.44665 1.02172 0.91349 1.24889 0.99195 0.94947 0.94535 1.69971 1.36219 1.43256 1.02268 0.86349 0.83780 0.78896 0.77485 1.20166 1.20939 1.19690 1.86542 1.33048 1.62598 1.44934 1.19339 0.81623 0.77004 0.85263 1.90910 1.55689 1.58079 1.32999 1.19975 0.94869 1.09934 0.86856 1.21089 0.96645 0.96041 0.94405 1.20048 0.93392 1.12929 0.96607 1.42553 1.00635 0.98249 1.00151 1.94553 1.20589 1.59827 1.63049 1.94511 1.85905 1.57449 1.01257 1.21594 0.90033 0.94823 0.97109 1.44248 1.16627 1.36304 1.09000 1.22721 0.79539 1.01885 1.04205 0.92403 0.94466 0.94853 0.88987 0.93605 0.92140 0.80649 0.78473 0.88724 0.88733 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.56 37.16 0.32 -2.61 16 2 C -0.13 -2.84 5.54 -26.73 -0.15 -2.99 16 3 C 0.22 5.28 2.12 -27.88 -0.06 5.22 16 4 H 0.06 1.56 7.11 -51.93 -0.37 1.19 16 5 C -0.53 -13.42 8.82 -34.44 -0.30 -13.73 16 6 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 7 C 0.07 1.74 5.16 -17.82 -0.09 1.65 16 8 N -0.88 -23.60 12.16 55.43 0.67 -22.93 16 9 Si 0.91 19.57 29.55 -169.99 -5.02 14.55 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 O -0.35 -7.16 7.23 -41.03 -0.30 -7.46 16 14 C 0.53 9.98 6.36 34.05 0.22 10.20 16 15 O -0.49 -10.55 14.08 -19.36 -0.27 -10.83 16 16 C -0.01 -0.09 6.89 -81.99 -0.56 -0.66 16 17 C -0.06 -0.83 10.39 -39.09 -0.41 -1.24 16 18 C -0.14 -1.83 7.11 -80.35 -0.57 -2.40 16 19 N 0.07 0.99 4.45 33.77 0.15 1.14 16 20 O -0.17 -2.62 19.05 -29.46 -0.56 -3.18 16 21 O -0.18 -2.60 19.03 -29.46 -0.56 -3.16 16 22 C 0.11 1.14 11.03 -17.16 -0.19 0.95 16 23 N -0.39 -4.53 3.15 -120.40 -0.38 -4.90 16 24 C 0.06 0.50 10.56 59.85 0.63 1.14 16 25 H 0.06 1.23 7.78 -51.93 -0.40 0.83 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 28 H 0.09 2.24 6.81 -51.93 -0.35 1.89 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.18 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.12 1.39 6.15 -51.92 -0.32 1.07 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -29.35 311.26 -6.59 -35.94 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.84 Total: 0.60 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.17 Total: -4.47 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.45 Total: -26.69 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.69 Total: -24.62 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.35 -6.59 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.287 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds