Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 O 1.45194 * 109.47240 * 65.00407 * 3 2 1 14 14 C 1.34896 * 116.99859 * 269.99752 * 13 3 2 15 15 O 1.21628 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.46493 * 119.99909 * 179.97438 * 14 13 3 17 17 C 1.38000 * 126.26218 * 180.02562 * 16 14 13 18 18 C 1.39794 * 106.96814 * 179.97438 * 17 16 14 19 19 C 1.35488 * 107.84318 * 0.02562 * 18 17 16 20 20 N 1.48025 * 125.50839 * 179.97438 * 19 18 17 21 21 O 1.21804 * 119.99671 * 359.97438 * 20 19 18 22 22 O 1.21798 * 120.00010 * 179.97438 * 20 19 18 23 23 N 1.34958 * 108.98222 * 359.75112 * 19 18 17 24 24 C 1.46510 * 125.63182 * 180.28571 * 23 19 18 25 25 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.07996 * 126.51558 * 359.97438 * 17 16 14 32 32 H 1.07997 * 126.08148 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.46821 * 270.13364 * 24 23 19 34 34 H 1.08996 * 109.46992 * 30.13585 * 24 23 19 35 35 H 1.08999 * 109.47108 * 150.13742 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5988 1.5453 -0.1939 11 1 6.4962 -0.5189 -1.4629 12 1 6.3999 1.6158 -2.6094 13 8 1.6560 2.0916 1.2407 14 6 0.4669 2.7285 1.2561 15 8 -0.2297 2.7402 0.2591 16 6 0.0142 3.4053 2.4739 17 6 -1.1722 4.0918 2.6332 18 6 -1.1924 4.5723 3.9458 19 6 -0.0446 4.1800 4.5493 20 7 0.3371 4.4789 5.9478 21 8 -0.4094 5.1296 6.6570 22 8 1.3977 4.0743 6.3894 23 7 0.6923 3.4684 3.6706 24 6 1.9988 2.8646 3.9443 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 -1.9393 4.2313 1.8859 32 1 -1.9822 5.1537 4.3982 33 1 2.7865 3.5789 3.7043 34 1 2.0611 2.5957 4.9987 35 1 2.1209 1.9703 3.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -41.342816 kcal Electronic energy + Delta-G solvation = -22446.375672 eV Core-core repulsion = 18835.249515 eV Total energy + Delta-G solvation = -3611.126158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.71780 -41.44118 -39.54726 -36.81655 -36.14867 -33.85139 -33.24755 -31.60588 -30.83989 -27.68752 -27.02112 -26.43121 -23.78034 -22.76935 -21.49793 -20.50119 -19.77226 -18.81015 -18.65496 -17.89612 -17.71476 -16.83475 -16.08201 -15.89849 -15.06439 -14.70545 -14.43527 -13.89089 -13.65753 -13.29004 -12.96358 -12.81179 -12.63831 -12.21343 -11.74650 -11.71151 -11.58367 -11.38234 -11.36320 -11.25589 -11.11735 -10.82720 -10.45697 -10.23245 -9.93224 -9.63336 -9.38559 -9.12274 -9.02623 -8.62913 -6.34935 -4.43478 -0.14843 0.85246 1.23169 2.13270 2.32796 3.08687 3.13187 3.15192 3.22201 3.28115 4.17699 4.40216 4.46121 4.97464 5.02424 5.07372 5.19384 5.29638 5.54476 5.75345 5.81338 5.99341 6.05477 6.11612 6.22967 6.28574 6.48812 6.62306 6.74239 6.94692 6.96921 7.40094 7.48302 7.52643 7.67737 7.93912 8.24723 8.64526 9.22676 10.71715 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.004704 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.541306 B = 5951.039506 C = 6775.410534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.281 1.281 13 O -0.352 6.352 14 C 0.522 3.478 15 O -0.484 6.484 16 C 0.055 3.945 17 C -0.121 4.121 18 C -0.101 4.101 19 C 0.063 3.937 20 N 0.061 4.939 21 O -0.141 6.141 22 O -0.173 6.173 23 N -0.381 5.381 24 C 0.044 3.956 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.268 0.732 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 4.756 9.926 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.564 4.564 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.206 1.206 13 O -0.268 6.268 14 C 0.364 3.636 15 O -0.371 6.371 16 C -0.063 4.063 17 C -0.146 4.146 18 C -0.130 4.130 19 C -0.135 4.135 20 N 0.578 4.422 21 O -0.357 6.357 22 O -0.383 6.383 23 N -0.058 5.058 24 C -0.095 4.095 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.193 0.807 32 H 0.190 0.810 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.306 4.295 8.857 11.690 hybrid contribution 1.080 -0.037 0.143 1.090 sum -5.226 4.258 9.000 11.244 Atomic orbital electron populations 1.21883 0.98265 0.99383 1.00702 1.22053 0.92707 0.99064 1.03661 1.20860 0.95351 0.88808 0.77897 0.93080 1.21010 0.89218 1.39589 1.06558 0.91234 1.24874 0.99386 0.94527 0.94944 1.69886 1.35476 1.37401 1.09429 0.86216 0.83573 0.78020 0.78342 1.19474 1.20588 1.20642 1.86583 1.32931 1.62348 1.44979 1.19427 0.81798 0.77130 0.85254 1.90909 1.55424 1.57850 1.32940 1.20488 0.94808 1.06219 0.84803 1.21460 0.96771 0.99867 0.96513 1.20799 0.95675 1.02522 0.93984 1.20728 0.97516 1.12315 0.82912 1.42538 1.00111 0.98639 1.00922 1.94569 1.49817 1.36888 1.54416 1.94542 1.11500 1.55171 1.77052 1.43935 1.17125 1.36649 1.08086 1.22921 0.79607 1.01540 1.05460 0.95151 0.92594 0.94499 0.87003 0.93858 0.92217 0.80690 0.80970 0.88759 0.87631 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.56 37.16 0.32 -2.61 16 2 C -0.14 -3.12 5.49 -26.73 -0.15 -3.26 16 3 C 0.22 5.37 2.25 -27.88 -0.06 5.31 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.53 -13.52 8.90 -34.44 -0.31 -13.83 16 6 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.88 -23.51 11.30 55.43 0.63 -22.89 16 9 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.35 -7.32 7.24 -41.03 -0.30 -7.62 16 14 C 0.52 9.89 6.37 34.06 0.22 10.11 16 15 O -0.48 -10.08 14.07 -19.36 -0.27 -10.35 16 16 C 0.06 0.85 6.89 -82.00 -0.56 0.28 16 17 C -0.12 -1.51 10.66 -39.09 -0.42 -1.93 16 18 C -0.10 -1.15 10.46 -39.98 -0.42 -1.57 16 19 C 0.06 0.85 7.85 -144.55 -1.14 -0.29 16 20 N 0.06 0.85 4.45 32.90 0.15 1.00 16 21 O -0.14 -1.95 19.00 -29.46 -0.56 -2.51 16 22 O -0.17 -2.49 16.64 -29.46 -0.49 -2.98 16 23 N -0.38 -5.46 3.15 -116.77 -0.37 -5.83 16 24 C 0.04 0.57 9.96 59.85 0.60 1.17 16 25 H 0.03 0.58 6.06 -51.93 -0.31 0.27 16 26 H 0.05 1.18 7.79 -51.93 -0.40 0.78 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.11 2.80 5.95 -51.93 -0.31 2.50 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.24 6.20 -51.93 -0.32 0.92 16 35 H 0.12 1.72 6.15 -51.93 -0.32 1.40 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -27.63 305.37 -7.35 -34.98 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.70 Total: 1.76 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.01 Total: -5.03 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.41 Total: -27.71 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.62 Total: -23.46 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.63 -7.35 -34.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.363 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds