Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 O 1.45196 * 109.47383 * 90.00563 * 5 4 3 7 7 C 1.34223 * 117.00080 * 179.97438 * 6 5 4 8 8 O 1.20829 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50709 * 119.99887 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47020 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47457 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47451 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47156 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99715 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00202 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99763 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47367 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46858 * 119.99977 * 17 15 13 20 20 H 1.48492 * 109.47301 * 239.99700 * 17 15 13 21 21 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 22 22 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 23 23 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 24 24 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 25 25 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 26 26 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 27 27 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 28 28 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 29 29 H 1.09000 * 109.46811 * 299.99398 * 9 7 6 30 30 H 1.08994 * 109.47033 * 59.99954 * 9 7 6 31 31 H 1.08999 * 109.47038 * 300.00065 * 10 9 7 32 32 H 1.08998 * 109.47263 * 59.99562 * 10 9 7 33 33 H 1.09005 * 109.46663 * 300.00303 * 11 10 9 34 34 H 1.09007 * 109.47076 * 59.99570 * 11 10 9 35 35 H 1.08999 * 109.47337 * 300.00145 * 12 11 10 36 36 H 1.09002 * 109.47102 * 60.00391 * 12 11 10 37 37 H 0.96999 * 119.99614 * 180.02562 * 16 15 13 38 38 H 1.07994 * 125.20771 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 8 4.9855 2.3013 1.3821 7 6 5.8896 3.2767 1.5632 8 8 6.3945 3.8174 0.6078 9 6 6.2749 3.6976 2.9581 10 6 7.3138 4.8183 2.8839 11 6 7.7055 5.2452 4.3000 12 6 8.7448 6.3655 4.2258 13 6 9.1301 6.7864 5.6206 14 1 8.6784 6.3034 6.4746 15 6 10.0584 7.7887 5.8066 16 7 10.6072 8.3779 4.7668 17 14 10.5354 8.3109 7.5356 18 1 9.7803 7.4995 8.5238 19 1 11.9921 8.0997 7.7322 20 1 10.2137 9.7481 7.7251 21 6 3.9751 -0.4477 0.0046 22 16 2.5210 -1.4372 -0.0034 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5137 26 1 1.8669 2.0895 0.0004 27 1 5.5642 1.6105 -0.4991 28 1 4.2586 2.8203 -0.5030 29 1 5.3914 4.0560 3.4864 30 1 6.6964 2.8455 3.4912 31 1 8.1972 4.4604 2.3553 32 1 6.8918 5.6703 2.3508 33 1 6.8221 5.6030 4.8290 34 1 8.1276 4.3930 4.8327 35 1 9.6280 6.0074 3.6970 36 1 8.3230 7.2178 3.6931 37 1 11.2606 9.0828 4.8977 38 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806023393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -84.854505 kcal Electronic energy + Delta-G solvation = -18348.060203 eV Core-core repulsion = 15281.340451 eV Total energy + Delta-G solvation = -3066.719752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50185 -38.66333 -36.48122 -34.95977 -32.84020 -32.62232 -30.03297 -28.09022 -27.03042 -25.69471 -22.88060 -21.91434 -20.53995 -20.01411 -19.38065 -17.66441 -17.49763 -16.57452 -16.25763 -16.14809 -15.12366 -14.74750 -14.43731 -14.34224 -13.76381 -13.47426 -13.31222 -13.01304 -12.63590 -12.62571 -12.38561 -12.15728 -11.90955 -11.67677 -11.64716 -11.14336 -11.01531 -10.74978 -10.57966 -10.53674 -10.45786 -10.36663 -9.64401 -9.29132 -9.01433 -8.97879 -8.80424 -8.31618 -5.96225 -3.98630 0.56127 1.21774 1.55816 2.03127 2.30567 3.03539 3.33097 3.40385 3.44470 4.31123 4.48657 4.57058 4.80064 4.82210 4.89164 4.99829 5.09422 5.16495 5.24746 5.29612 5.32138 5.39408 5.48636 5.72668 5.75263 5.97676 6.06842 6.07891 6.20655 6.40623 6.49003 6.77708 6.95875 7.16998 7.72960 7.83367 7.87625 8.04823 8.46638 9.09182 9.65191 11.15138 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045300 B = 0.002118 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.946722 B =13214.215279 C =13369.795730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 C -0.125 4.125 4 C -0.105 4.105 5 C 0.126 3.874 6 O -0.356 6.356 7 C 0.460 3.540 8 O -0.506 6.506 9 C -0.111 4.111 10 C -0.108 4.108 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.189 4.189 22 S 0.106 5.894 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.889 -20.125 -11.193 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 C -0.155 4.155 4 C -0.118 4.118 5 C 0.050 3.950 6 O -0.274 6.274 7 C 0.303 3.697 8 O -0.393 6.393 9 C -0.149 4.149 10 C -0.146 4.146 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.147 4.147 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.325 4.325 22 S 0.370 5.630 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.160 0.840 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.919 -21.426 -11.569 31.459 hybrid contribution 0.744 1.851 0.740 2.127 sum -19.175 -19.575 -10.829 29.464 Atomic orbital electron populations 1.20347 0.87549 1.03380 1.02845 1.24467 1.00154 0.95536 1.09610 1.19966 0.92022 0.99713 1.03779 1.18547 0.94113 0.93536 1.05582 1.21420 0.96608 0.95632 0.81347 1.86599 1.57115 1.52616 1.31068 1.24244 0.75632 0.76231 0.93605 1.90675 1.51880 1.53167 1.43558 1.21614 1.02197 1.01597 0.89475 1.21578 0.97033 0.96014 0.99970 1.21651 1.00127 1.00070 0.92914 1.19105 0.93191 0.92511 0.96978 1.21313 1.23108 1.18666 0.92697 0.92636 1.25050 0.96344 0.96480 0.96780 1.69984 1.28892 1.25340 1.29248 0.86543 0.78242 0.78377 0.84873 1.19755 1.21065 1.21055 1.25570 1.02432 0.96114 1.08400 1.84263 0.96437 1.09403 1.72854 0.90642 0.91207 0.90310 0.84004 0.90292 0.90164 0.87877 0.87889 0.91549 0.91533 0.93198 0.93205 0.96532 0.96534 0.93093 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.00 0.37 -0.06 16 2 C -0.18 -1.43 6.51 -36.00 -0.23 -1.67 16 3 C -0.13 -1.12 9.85 -41.21 -0.41 -1.53 16 4 C -0.11 -1.03 5.44 -106.25 -0.58 -1.61 16 5 C 0.13 1.37 5.71 36.01 0.21 1.58 16 6 O -0.36 -4.59 10.20 -39.24 -0.40 -4.99 16 7 C 0.46 6.65 7.96 36.01 0.29 6.94 16 8 O -0.51 -8.78 15.73 -18.75 -0.30 -9.08 16 9 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 10 C -0.11 -1.88 4.50 -26.73 -0.12 -2.01 16 11 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 12 C 0.02 0.50 4.97 -27.89 -0.14 0.37 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.19 -1.66 10.98 29.04 0.32 -1.34 16 22 S 0.11 0.82 23.33 -107.50 -2.51 -1.69 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -32.83 343.12 -9.20 -42.03 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -5.88 Total: -4.51 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.00 Total: -17.10 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.70 Total: -14.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.83 -9.20 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806023393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.826 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds