Wall clock time and date at job start Tue Mar 31 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47201 * 240.00243 * 3 2 1 5 5 H 1.48498 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46668 * 120.00341 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47195 * 179.97438 * 10 9 7 12 12 O 1.20831 * 120.00133 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00162 * 180.02562 * 11 10 9 14 14 C 1.45203 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47122 * 179.97438 * 14 13 11 16 16 O 1.42895 * 109.47006 * 64.99554 * 15 14 13 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96996 * 119.99951 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47144 * 60.00207 * 9 7 2 26 26 H 1.09007 * 109.46861 * 300.00418 * 9 7 2 27 27 H 1.08997 * 109.47234 * 59.99859 * 10 9 7 28 28 H 1.08994 * 109.47133 * 299.99853 * 10 9 7 29 29 H 1.08997 * 109.47475 * 60.00276 * 14 13 11 30 30 H 1.08996 * 109.47060 * 299.99679 * 14 13 11 31 31 H 1.09005 * 109.46539 * 305.00041 * 15 14 13 32 32 H 1.08995 * 109.46786 * 185.00178 * 15 14 13 33 33 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 35 35 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 0.0001 12 8 0.2835 -4.9672 0.0010 13 8 2.1629 -6.1296 0.0007 14 6 1.3720 -7.3474 0.0019 15 6 2.3041 -8.5608 0.0018 16 8 3.0467 -8.5910 1.2223 17 6 3.9271 -9.6143 1.3838 18 6 4.0768 -10.5654 0.3853 19 6 4.9681 -11.6075 0.5529 20 6 5.7198 -11.6967 1.7122 21 9 6.5955 -12.7129 1.8723 22 6 5.5753 -10.7451 2.7074 23 6 4.6808 -9.7047 2.5447 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.7429 -7.3730 -0.8878 30 1 0.7436 -7.3716 0.8921 31 1 2.9922 -8.4902 -0.8406 32 1 1.7134 -9.4725 -0.0869 33 1 3.4942 -10.4932 -0.5212 34 1 5.0819 -12.3505 -0.2226 35 1 6.1619 -10.8160 3.6114 36 1 4.5685 -8.9623 3.3210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:54 Heat of formation + Delta-G solvation = -156.873435 kcal Electronic energy + Delta-G solvation = -20421.913436 eV Core-core repulsion = 16785.857533 eV Total energy + Delta-G solvation = -3636.055903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.11515 -40.50940 -39.89022 -37.64990 -36.13659 -33.59857 -31.85108 -31.38460 -30.81307 -29.19256 -26.12633 -24.34633 -23.01977 -22.43218 -21.67842 -19.88998 -18.78299 -17.73422 -17.48181 -17.01356 -16.52228 -16.14776 -15.95691 -15.61493 -15.40733 -15.09174 -14.49002 -14.35866 -13.98452 -13.81141 -13.28017 -13.08757 -12.90417 -12.50022 -12.24464 -12.23194 -11.89157 -11.23786 -11.22905 -11.11899 -10.94909 -10.67298 -10.47275 -10.05557 -9.96174 -9.57996 -9.56360 -9.20339 -8.43494 -8.38441 -6.02451 -4.07438 0.77729 0.86807 2.75961 2.80714 2.98502 3.21337 3.32420 3.37066 3.39245 3.96806 4.26576 4.38510 4.43164 4.54360 4.71746 4.73471 4.84779 4.94597 5.07344 5.24222 5.32881 5.39631 5.50394 5.64336 5.73372 5.79560 5.86076 6.10822 6.18366 6.33532 6.59481 6.88716 7.01573 7.64840 7.71782 7.96744 8.22481 8.38095 8.99435 9.56615 11.08531 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.002415 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.044753 B =11590.496897 C =12175.478851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.458 3.542 12 O -0.506 6.506 13 O -0.361 6.361 14 C 0.064 3.936 15 C 0.061 3.939 16 O -0.301 6.301 17 C 0.127 3.873 18 C -0.184 4.184 19 C -0.112 4.112 20 C 0.053 3.947 21 F -0.143 7.143 22 C -0.112 4.112 23 C -0.123 4.123 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -24.239 1.429 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.302 3.698 12 O -0.393 6.393 13 O -0.279 6.279 14 C -0.010 4.010 15 C -0.014 4.014 16 O -0.214 6.214 17 C 0.081 3.919 18 C -0.203 4.203 19 C -0.131 4.131 20 C 0.034 3.966 21 F -0.122 7.122 22 C -0.131 4.131 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.506 -24.017 1.557 25.526 hybrid contribution 0.387 0.477 -0.220 0.653 sum 8.893 -23.539 1.337 25.199 Atomic orbital electron populations 1.69981 1.06097 1.26893 1.49847 1.25025 0.94866 0.99345 0.95102 0.86593 0.79503 0.82852 0.78657 1.20157 1.21260 1.20144 1.21118 0.93049 0.90642 1.51928 0.92341 1.19016 0.93222 0.89279 0.98880 1.21770 1.00684 0.87534 1.04073 1.24804 0.87931 0.85621 0.71477 1.90641 1.15877 1.87658 1.45112 1.86623 1.41651 1.14691 1.84900 1.22931 0.92784 0.81442 1.03856 1.22980 0.94564 0.97639 0.86211 1.86214 1.51200 1.44564 1.39460 1.19078 0.90729 0.87731 0.94337 1.21146 1.02769 0.96216 1.00172 1.20928 0.96151 0.99167 0.96835 1.17581 0.93795 0.88587 0.96635 1.91489 1.67060 1.57729 1.95914 1.20980 0.99272 0.93696 0.99109 1.20356 0.96835 0.99767 0.97195 0.92779 0.95605 0.95584 0.88856 0.88935 0.89044 0.90197 0.90487 0.89774 0.84391 0.84504 0.84022 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.87 4.26 -27.89 -0.12 0.75 16 10 C -0.10 -2.09 5.75 -27.89 -0.16 -2.25 16 11 C 0.46 8.86 7.96 36.00 0.29 9.14 16 12 O -0.51 -11.27 15.73 -18.75 -0.30 -11.57 16 13 O -0.36 -5.76 10.19 -42.01 -0.43 -6.19 16 14 C 0.06 0.77 5.85 37.16 0.22 0.99 16 15 C 0.06 0.55 5.13 37.16 0.19 0.74 16 16 O -0.30 -3.42 10.11 -23.15 -0.23 -3.65 16 17 C 0.13 1.26 6.69 -39.23 -0.26 1.00 16 18 C -0.18 -1.50 9.04 -39.44 -0.36 -1.86 16 19 C -0.11 -0.90 10.02 -39.53 -0.40 -1.29 16 20 C 0.05 0.48 7.30 -39.42 -0.29 0.20 16 21 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 22 C -0.11 -0.93 10.02 -39.53 -0.40 -1.33 16 23 C -0.12 -1.12 9.99 -39.44 -0.39 -1.52 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 28 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.08 0.61 7.65 -51.93 -0.40 0.22 16 32 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 33 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -33.15 324.59 -6.87 -40.02 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.47 Total: -3.39 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.09 Total: -8.91 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.96 Total: -21.41 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.15 -6.87 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.855 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds