Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46777 * 65.00539 * 12 11 10 14 14 C 1.34224 * 117.00077 * 179.97438 * 13 12 11 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.38273 * 119.98412 * 269.72095 * 17 16 14 19 19 C 1.38224 * 120.04908 * 179.72977 * 18 17 16 20 20 C 1.38218 * 120.02248 * 0.54573 * 19 18 17 21 21 C 1.38438 * 119.97641 * 359.72658 * 20 19 18 22 22 F 1.35104 * 120.02483 * 180.02562 * 21 20 19 23 23 C 1.38175 * 119.99056 * 89.99986 * 17 16 14 24 24 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 26 26 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 27 27 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 28 28 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 29 29 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 30 30 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 31 31 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 32 32 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 33 33 H 1.07994 * 119.97201 * 359.97438 * 18 17 16 34 34 H 1.07996 * 119.98566 * 180.27733 * 19 18 17 35 35 H 1.07999 * 120.01098 * 179.75296 * 20 19 18 36 36 H 1.08005 * 120.00769 * 359.97322 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2407 14 6 4.3941 -6.7762 1.3997 15 8 4.6279 -7.5835 0.5316 16 6 5.2180 -6.7669 2.6615 17 6 6.2597 -7.8535 2.5894 18 6 5.9728 -9.1188 3.0678 19 6 6.9253 -10.1179 2.9972 20 6 8.1697 -9.8502 2.4585 21 6 8.4600 -8.5824 1.9843 22 9 9.6759 -8.3197 1.4571 23 6 7.5031 -7.5837 2.0505 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 0.9446 -4.9827 -0.8887 28 1 0.9451 -4.9822 0.8913 29 1 3.3209 -5.7958 -0.8418 30 1 2.1818 -6.9376 -0.0887 31 1 5.7093 -5.7996 2.7675 32 1 4.5696 -6.9411 3.5201 33 1 5.0024 -9.3274 3.4932 34 1 6.6986 -11.1069 3.3670 35 1 8.9152 -10.6300 2.4070 36 1 7.7283 -6.5942 1.6806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -161.665484 kcal Electronic energy + Delta-G solvation = -20629.316805 eV Core-core repulsion = 16993.053103 eV Total energy + Delta-G solvation = -3636.263702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.10929 -40.56850 -39.18397 -37.08404 -36.03683 -33.28795 -32.78223 -30.86913 -30.25522 -28.23193 -26.89065 -23.28369 -22.97831 -22.39636 -21.90080 -20.70855 -17.74103 -17.60241 -16.91243 -16.58386 -16.45384 -16.34648 -16.06197 -15.74307 -15.37691 -14.74629 -14.35786 -14.32528 -13.74206 -13.61498 -13.56947 -13.05961 -12.71969 -12.33266 -12.26625 -12.00353 -11.90004 -11.45425 -11.38352 -10.95642 -10.86401 -10.78726 -10.46070 -10.39679 -10.06837 -9.29344 -9.15170 -8.96833 -8.89762 -8.23673 -6.13875 -4.15669 0.80150 0.91468 2.23121 2.70973 3.29061 3.34114 3.37874 3.39489 3.92125 4.24544 4.30693 4.42780 4.68015 4.70732 4.83125 4.86902 4.94554 5.12005 5.20177 5.22788 5.23272 5.43620 5.51208 5.73913 5.80685 5.83817 5.90664 5.96873 6.06412 6.12989 6.54523 6.60755 7.02963 7.37414 7.75894 7.80980 8.10332 8.49942 8.96858 9.49218 10.97683 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.002779 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.236499 B =10074.020599 C =10808.443059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.340 6.340 14 C 0.461 3.539 15 O -0.509 6.509 16 C -0.078 4.078 17 C -0.044 4.044 18 C -0.114 4.114 19 C -0.090 4.090 20 C -0.153 4.153 21 C 0.099 3.901 22 F -0.140 7.140 23 C -0.136 4.136 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -19.823 7.489 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.304 3.696 15 O -0.398 6.398 16 C -0.115 4.115 17 C -0.044 4.044 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.172 4.172 21 C 0.080 3.920 22 F -0.118 7.118 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.567 -19.872 7.182 24.089 hybrid contribution 0.185 0.851 -0.337 0.934 sum 11.751 -19.021 6.845 23.383 Atomic orbital electron populations 1.69958 1.06113 1.27227 1.50499 1.24952 0.94994 0.99471 0.95089 0.86321 0.79676 0.82160 0.78256 1.20456 1.21050 1.19579 1.21049 0.94102 0.89291 1.50912 0.91503 1.20241 0.88743 0.83487 0.95515 1.87916 1.35340 1.12617 1.95228 1.22325 0.93247 0.85471 1.00584 1.23227 0.93641 0.98782 0.84215 1.86592 1.43367 1.53975 1.41678 1.23395 0.79281 0.78250 0.88678 1.90678 1.67668 1.38011 1.43399 1.20329 0.95705 1.00334 0.95181 1.19139 0.93212 0.94462 0.97596 1.21100 0.99806 0.92174 1.00107 1.20966 0.92337 0.99485 0.98056 1.21166 0.98822 0.95588 1.01621 1.17631 0.81182 0.94481 0.98733 1.91509 1.41530 1.94636 1.84169 1.21044 0.93109 0.99864 1.01509 0.92610 0.97619 0.97462 0.91935 0.93162 0.90480 0.90417 0.86076 0.86174 0.85189 0.84827 0.84761 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.13 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.28 5.69 36.01 0.20 5.48 16 10 O -0.39 -9.39 10.30 -38.79 -0.40 -9.79 16 11 C 0.06 1.10 6.33 37.16 0.24 1.34 16 12 C 0.07 1.16 5.85 37.16 0.22 1.38 16 13 O -0.34 -5.42 10.19 -42.00 -0.43 -5.84 16 14 C 0.46 6.38 7.95 36.00 0.29 6.66 16 15 O -0.51 -8.23 15.78 -18.76 -0.30 -8.52 16 16 C -0.08 -0.75 5.94 -29.04 -0.17 -0.92 16 17 C -0.04 -0.44 4.37 -104.63 -0.46 -0.90 16 18 C -0.11 -0.98 9.70 -39.57 -0.38 -1.37 16 19 C -0.09 -0.71 10.04 -39.59 -0.40 -1.10 16 20 C -0.15 -1.34 10.03 -39.51 -0.40 -1.74 16 21 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 22 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 23 C -0.14 -1.46 9.68 -39.52 -0.38 -1.84 16 24 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.12 1.02 8.08 -51.92 -0.42 0.60 16 32 H 0.12 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -33.95 328.81 -6.98 -40.93 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.61 Total: -4.72 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.96 Total: -6.18 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.12 Total: -24.16 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.95 -6.98 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.734 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds