Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47293 * 270.00239 * 3 2 1 5 5 H 1.48503 * 109.47035 * 30.00303 * 3 2 1 6 6 H 1.48498 * 109.46904 * 149.99738 * 3 2 1 7 7 C 1.37875 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00128 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99934 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00159 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47156 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.47231 * 64.99939 * 12 11 10 14 14 C 1.34221 * 116.99903 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00367 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00092 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38216 * 120.01717 * 99.99685 * 17 16 14 19 19 C 1.38222 * 120.02705 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05202 * 0.02562 * 19 18 17 21 21 C 1.38177 * 120.02417 * 0.02562 * 20 19 18 22 22 C 1.38444 * 120.00987 * 279.72150 * 17 16 14 23 23 F 1.35100 * 120.02524 * 359.97438 * 22 17 16 24 24 H 0.97008 * 119.99953 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47668 * 60.00018 * 9 7 2 26 26 H 1.09006 * 109.47305 * 299.99754 * 9 7 2 27 27 H 1.08997 * 109.47190 * 60.00357 * 11 10 9 28 28 H 1.08998 * 109.46988 * 299.99723 * 11 10 9 29 29 H 1.08995 * 109.46885 * 304.99897 * 12 11 10 30 30 H 1.09006 * 109.46726 * 185.00266 * 12 11 10 31 31 H 1.09001 * 109.46953 * 299.99668 * 16 14 13 32 32 H 1.09000 * 109.47318 * 59.99266 * 16 14 13 33 33 H 1.08002 * 119.98512 * 359.97438 * 18 17 16 34 34 H 1.08004 * 119.97441 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.98818 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.01029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4123 -2.6542 -0.0001 12 6 5.8068 -4.1325 -0.0009 13 8 5.3726 -4.7487 -1.2419 14 6 5.6435 -6.0535 -1.4017 15 8 6.2245 -6.6607 -0.5336 16 6 5.2238 -6.7611 -2.6644 17 6 5.6428 -8.2069 -2.5930 18 6 4.7206 -9.1780 -2.2513 19 6 5.1046 -10.5043 -2.1863 20 6 6.4116 -10.8611 -2.4625 21 6 7.3355 -9.8919 -2.8034 22 6 6.9504 -8.5636 -2.8754 23 9 7.8512 -7.6160 -3.2155 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 5.8151 -2.1708 0.8899 28 1 5.8150 -2.1706 -0.8901 29 1 5.3310 -4.6359 0.8406 30 1 6.8897 -4.2196 0.0887 31 1 4.1407 -6.7020 -2.7712 32 1 5.6999 -6.2863 -3.5223 33 1 3.6996 -8.9004 -2.0349 34 1 4.3831 -11.2624 -1.9195 35 1 6.7105 -11.8975 -2.4110 36 1 8.3564 -10.1707 -3.0187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -155.030544 kcal Electronic energy + Delta-G solvation = -20950.797595 eV Core-core repulsion = 17314.821606 eV Total energy + Delta-G solvation = -3635.975989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.12236 -40.49422 -39.15668 -37.22797 -36.11649 -33.36977 -32.70563 -30.84178 -30.41329 -28.27351 -27.44468 -23.28433 -23.01297 -22.05440 -21.84687 -20.70269 -17.86919 -17.75965 -17.03653 -16.90647 -16.45327 -16.31586 -15.95327 -15.54924 -15.38414 -14.85420 -14.48033 -14.38193 -13.67746 -13.56145 -13.43654 -13.23641 -12.63253 -12.50284 -12.38855 -12.33255 -11.84076 -11.70704 -11.35225 -11.17062 -10.89185 -10.69001 -10.48734 -10.42259 -9.88901 -9.29039 -9.22497 -8.94747 -8.91744 -8.52460 -6.13835 -4.13219 0.81040 0.92323 2.25388 2.72124 3.23171 3.30181 3.30990 3.37163 3.99001 4.19229 4.33159 4.41276 4.46861 4.63834 4.81585 4.88051 4.99763 5.14618 5.17352 5.18490 5.24586 5.37440 5.54271 5.68889 5.74092 5.78551 5.83030 5.95898 6.00080 6.09420 6.53405 6.54165 6.60219 6.95054 7.55588 7.81105 7.94202 8.61616 8.97293 9.44936 10.99150 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033689 B = 0.002870 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.923620 B = 9753.243287 C =10185.885758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.058 3.942 12 C 0.075 3.925 13 O -0.340 6.340 14 C 0.464 3.536 15 O -0.509 6.509 16 C -0.077 4.077 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.116 3.884 23 F -0.137 7.137 24 H 0.267 0.733 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -19.169 -6.590 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.306 3.694 15 O -0.398 6.398 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.108 4.108 21 C -0.174 4.174 22 C 0.097 3.903 23 F -0.115 7.115 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.452 -19.297 -6.312 24.921 hybrid contribution 0.817 1.367 0.117 1.596 sum 15.268 -17.931 -6.195 24.352 Atomic orbital electron populations 1.69875 1.06064 1.27132 1.50239 1.24769 0.94822 0.98768 0.94607 0.86841 0.80320 0.83716 0.78809 1.19870 1.20750 1.19111 1.20875 0.88188 0.95375 1.51336 0.89922 1.20638 0.96323 0.79255 0.94482 1.87972 1.16668 1.29771 1.95089 1.22405 0.86102 0.92849 1.00658 1.23182 0.99144 0.93145 0.84421 1.86581 1.73546 1.23984 1.41481 1.23376 0.76160 0.81137 0.88684 1.90662 1.38638 1.67006 1.43457 1.20220 1.05316 0.90637 0.95220 1.19380 0.92799 0.95058 1.03693 1.21010 0.99481 0.92280 0.96629 1.21200 0.96525 0.96214 1.00891 1.21038 0.92933 0.99301 0.97495 1.21118 1.01281 0.91158 1.03874 1.17531 0.86363 0.86126 1.00262 1.91499 1.66637 1.63859 1.89536 0.92319 0.97842 0.98143 0.91778 0.93002 0.90314 0.90306 0.85741 0.86412 0.84605 0.85077 0.84991 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -15.48 9.99 -34.44 -0.34 -15.82 16 8 H 0.08 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.17 4.26 4.76 36.00 0.17 4.43 16 10 O -0.38 -8.80 10.30 -38.79 -0.40 -9.20 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 C 0.07 1.17 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.63 10.19 -42.00 -0.43 -6.06 16 14 C 0.46 6.93 7.94 36.01 0.29 7.21 16 15 O -0.51 -8.69 15.70 -18.75 -0.29 -8.99 16 16 C -0.08 -0.85 5.67 -29.03 -0.16 -1.01 16 17 C -0.11 -1.20 4.43 -104.56 -0.46 -1.66 16 18 C -0.08 -0.71 9.67 -39.60 -0.38 -1.09 16 19 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 20 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 21 C -0.16 -1.42 10.03 -39.51 -0.40 -1.82 16 22 C 0.12 1.33 7.14 -39.42 -0.28 1.05 16 23 F -0.14 -1.71 16.66 2.25 0.04 -1.68 16 24 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 26 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 30 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.12 1.13 8.00 -51.93 -0.42 0.71 16 32 H 0.12 1.13 7.94 -51.93 -0.41 0.72 16 33 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -34.86 324.23 -6.67 -41.53 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -4.56 Total: -3.74 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.01 Total: -6.57 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.12 Total: -24.25 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.86 -6.67 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.497 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds