Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38353 * 119.86327 * 2 1 4 4 C 1.37926 * 120.18188 * 180.24100 * 3 2 1 5 5 C 1.39647 * 119.89682 * 359.46431 * 4 3 2 6 6 C 1.47735 * 120.13422 * 180.26118 * 5 4 3 7 7 O 1.21469 * 120.00413 * 359.97438 * 6 5 4 8 8 O 1.34716 * 119.99683 * 180.02562 * 6 5 4 9 9 C 1.45195 * 116.99893 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47442 * 179.97438 * 9 8 6 11 11 O 1.42893 * 109.46814 * 64.99903 * 10 9 8 12 12 C 1.42900 * 113.99908 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47222 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99779 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99849 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99705 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46945 * 60.00482 * 17 15 13 19 19 H 1.48504 * 109.47070 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47230 * 300.00194 * 17 15 13 21 21 C 1.39578 * 119.72830 * 0.27571 * 5 4 3 22 22 C 1.38197 * 119.82006 * 0.02562 * 21 5 4 23 23 F 1.35103 * 119.95412 * 179.97438 * 22 21 5 24 24 H 1.09003 * 109.46705 * 270.27365 * 1 2 3 25 25 H 1.09001 * 109.47027 * 30.27564 * 1 2 3 26 26 H 1.08997 * 109.46946 * 150.27753 * 1 2 3 27 27 H 1.08000 * 119.90912 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.05399 * 179.74610 * 4 3 2 29 29 H 1.09004 * 109.47482 * 300.00414 * 9 8 6 30 30 H 1.09005 * 109.46884 * 60.00135 * 9 8 6 31 31 H 1.09000 * 109.47460 * 185.00659 * 10 9 8 32 32 H 1.09003 * 109.47082 * 305.00473 * 10 9 8 33 33 H 1.08999 * 109.47690 * 300.00335 * 12 11 10 34 34 H 1.09002 * 109.47203 * 60.00156 * 12 11 10 35 35 H 0.97009 * 119.99347 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.09373 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5752 1.2075 -0.0050 5 6 4.2780 0.0008 0.0012 6 6 5.7553 0.0029 0.0017 7 8 6.3612 1.0557 -0.0038 8 8 6.4305 -1.1628 0.0072 9 6 7.8804 -1.0848 0.0068 10 6 8.4672 -2.4977 0.0141 11 8 8.1240 -3.1623 -1.2035 12 6 8.6259 -4.4969 -1.2986 13 6 8.2072 -5.0983 -2.6155 14 1 7.6165 -4.5195 -3.3100 15 6 8.5773 -6.3880 -2.9330 16 7 9.2953 -7.0934 -2.0866 17 14 8.0576 -7.1338 -4.5650 18 1 8.6060 -6.3186 -5.6787 19 1 8.5793 -8.5206 -4.6639 20 1 6.5752 -7.1547 -4.6500 21 6 3.5789 -1.2073 0.0067 22 6 2.1970 -1.2017 0.0053 23 9 1.5176 -2.3694 0.0101 24 1 -0.3633 0.0049 1.0277 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5095 27 1 1.6522 2.1330 0.0004 28 1 4.1108 2.1453 -0.0091 29 1 8.2156 -0.5563 -0.8857 30 1 8.2156 -0.5479 0.8943 31 1 9.5520 -2.4402 0.1034 32 1 8.0622 -3.0550 0.8588 33 1 9.7140 -4.4813 -1.2364 34 1 8.2238 -5.0954 -0.4812 35 1 9.5560 -8.0006 -2.3102 36 1 4.1165 -2.1440 0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815176018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -162.118612 kcal Electronic energy + Delta-G solvation = -20965.808299 eV Core-core repulsion = 17329.524948 eV Total energy + Delta-G solvation = -3636.283351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.08388 -40.57584 -38.98766 -37.06021 -36.04346 -33.39742 -32.76770 -30.94557 -30.17621 -27.98244 -26.88900 -23.69690 -23.18567 -22.41255 -21.94427 -20.85890 -18.42780 -17.42673 -16.55296 -16.47743 -16.36949 -16.11250 -15.89728 -15.47055 -15.31243 -14.64860 -14.36343 -14.20392 -13.75399 -13.55861 -13.48572 -13.07419 -12.83130 -12.65033 -12.10220 -12.00010 -11.90161 -11.67043 -11.44709 -10.96649 -10.86824 -10.78230 -10.51821 -10.41533 -10.06156 -9.31683 -9.15253 -8.98505 -8.88741 -8.22575 -6.12498 -4.14357 0.31530 0.87654 2.33840 2.63419 3.32326 3.34772 3.36946 3.38880 3.89865 4.26997 4.31793 4.40745 4.61499 4.70523 4.78169 4.90238 5.18164 5.20014 5.20361 5.24114 5.34705 5.43142 5.58876 5.65291 5.70980 5.82506 5.85814 5.93813 5.99205 6.08576 6.47959 6.49038 7.03749 7.38418 7.73311 7.77364 8.11471 8.50832 8.97809 9.50483 10.98987 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.003698 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.243423 B = 7569.976035 C = 8877.905715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.108 4.108 4 C -0.063 4.063 5 C -0.099 4.099 6 C 0.509 3.491 7 O -0.509 6.509 8 O -0.335 6.335 9 C 0.075 3.925 10 C 0.061 3.939 11 O -0.391 6.391 12 C 0.195 3.805 13 C -0.517 4.517 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.088 4.088 22 C 0.085 3.915 23 F -0.131 7.131 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 16.160 7.295 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.081 4.081 5 C -0.101 4.101 6 C 0.354 3.646 7 O -0.400 6.400 8 O -0.251 6.251 9 C 0.002 3.998 10 C -0.017 4.017 11 O -0.311 6.311 12 C 0.121 3.879 13 C -0.555 4.555 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.107 4.107 22 C 0.066 3.934 23 F -0.110 7.110 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.456 16.284 7.166 22.924 hybrid contribution 0.113 -0.850 -0.575 1.032 sum -14.344 15.434 6.591 22.077 Atomic orbital electron populations 1.20824 0.89701 1.03842 1.03209 1.20253 0.97453 0.91965 0.99272 1.20856 0.93406 0.97367 1.00964 1.21319 0.93926 0.97593 0.95260 1.18953 0.89829 0.93957 1.07338 1.20986 0.88456 0.82272 0.72906 1.90814 1.70184 1.32728 1.46253 1.86639 1.22802 1.32653 1.82961 1.23279 0.75220 0.98532 1.02775 1.22332 0.97761 0.90959 0.90618 1.87919 1.77425 1.30740 1.35016 1.20235 0.93469 0.76668 0.97556 1.21014 1.34024 0.98288 1.02139 0.91550 1.24944 0.95051 0.96597 0.97835 1.69954 1.37311 1.10627 1.35905 0.86385 0.79069 0.77915 0.83062 1.19992 1.21119 1.19952 1.21608 0.92446 0.99986 0.96639 1.17381 0.89647 0.81375 1.04984 1.91527 1.79748 1.45791 1.93911 0.90269 0.90542 0.90701 0.84053 0.83756 0.90251 0.90204 0.91773 0.93125 0.97589 0.97481 0.92558 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.83 36.01 0.35 -0.43 16 2 C -0.09 -0.81 5.89 -104.46 -0.62 -1.43 16 3 C -0.11 -0.88 9.68 -39.65 -0.38 -1.26 16 4 C -0.06 -0.64 9.59 -39.17 -0.38 -1.01 16 5 C -0.10 -1.27 5.87 -104.99 -0.62 -1.89 16 6 C 0.51 7.78 7.90 34.61 0.27 8.05 16 7 O -0.51 -8.41 16.14 -19.24 -0.31 -8.72 16 8 O -0.33 -5.61 9.44 -43.32 -0.41 -6.02 16 9 C 0.08 1.19 5.85 37.16 0.22 1.40 16 10 C 0.06 1.10 6.33 37.16 0.24 1.34 16 11 O -0.39 -9.46 10.30 -38.81 -0.40 -9.86 16 12 C 0.19 5.33 5.69 36.01 0.20 5.54 16 13 C -0.52 -15.30 9.43 -34.44 -0.32 -15.62 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.09 -1.12 9.60 -39.10 -0.38 -1.49 16 22 C 0.09 0.99 7.23 -39.48 -0.29 0.70 16 23 F -0.13 -1.64 16.46 2.25 0.04 -1.60 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.07 0.53 7.63 -51.93 -0.40 0.13 16 27 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.16 2.11 7.61 -52.49 -0.40 1.71 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -33.09 326.96 -6.77 -39.86 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.54 Total: -4.82 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.79 Total: -4.55 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.12 Total: -24.60 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.09 -6.77 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815176018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.257 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds