Wall clock time and date at job start Tue Mar 31 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37979 * 120.05068 * 2 1 4 4 C 1.38304 * 120.17500 * 180.24980 * 3 2 1 5 5 C 1.38606 * 120.28292 * 359.48960 * 4 3 2 6 6 F 1.35098 * 119.95527 * 180.24986 * 5 4 3 7 7 C 1.38159 * 120.09527 * 0.27852 * 5 4 3 8 8 C 1.39603 * 120.05126 * 179.76630 * 2 1 3 9 9 C 1.47737 * 120.13522 * 359.97438 * 8 2 1 10 10 O 1.21472 * 120.00402 * 353.79341 * 9 8 2 11 11 O 1.34716 * 119.99931 * 173.78999 * 9 8 2 12 12 C 1.45200 * 116.99902 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46972 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47353 * 64.99754 * 13 12 11 15 15 C 1.42902 * 114.00028 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46902 * 179.97438 * 15 14 13 17 17 H 1.07989 * 120.00439 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99308 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00765 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99629 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47079 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46610 * 119.99936 * 20 18 16 23 23 H 1.48494 * 109.47320 * 240.00258 * 20 18 16 24 24 H 1.08998 * 109.46801 * 263.64803 * 1 2 3 25 25 H 1.08998 * 109.47040 * 23.65284 * 1 2 3 26 26 H 1.09005 * 109.47173 * 143.64754 * 1 2 3 27 27 H 1.07996 * 119.91124 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.85861 * 179.76354 * 4 3 2 29 29 H 1.07992 * 120.09049 * 179.97438 * 7 5 4 30 30 H 1.09000 * 109.47127 * 299.99654 * 12 11 9 31 31 H 1.08992 * 109.47498 * 60.00049 * 12 11 9 32 32 H 1.08994 * 109.46929 * 185.00055 * 13 12 11 33 33 H 1.09008 * 109.46852 * 304.99649 * 13 12 11 34 34 H 1.08996 * 109.47098 * 299.99928 * 15 14 13 35 35 H 1.08999 * 109.46871 * 59.99828 * 15 14 13 36 36 H 0.96995 * 120.00639 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1943 0.0000 4 6 3.5810 1.1973 -0.0052 5 6 4.2826 0.0020 0.0002 6 9 5.6335 0.0126 0.0002 7 6 3.6023 -1.2006 0.0050 8 6 2.2061 -1.2084 0.0049 9 6 1.4716 -2.4902 0.0107 10 8 0.2623 -2.4968 0.1250 11 8 2.1430 -3.6518 -0.1107 12 6 1.3565 -4.8722 -0.0975 13 6 2.2853 -6.0791 -0.2449 14 8 3.1380 -6.1665 0.8984 15 6 4.0503 -7.2657 0.8605 16 6 4.8956 -7.2601 2.1081 17 1 4.7510 -6.4937 2.8550 18 6 5.8537 -8.2337 2.2959 19 7 6.0303 -9.1668 1.3861 20 14 6.9021 -8.2265 3.8420 21 1 6.5096 -7.0803 4.7008 22 1 6.6957 -9.4952 4.5858 23 1 8.3337 -8.0986 3.4689 24 1 -0.3633 -0.1137 1.0214 25 1 -0.3633 0.9413 -0.4123 26 1 -0.3634 -0.8277 -0.6092 27 1 1.6574 2.1292 0.0004 28 1 4.1166 2.1351 -0.0091 29 1 4.1490 -2.1319 0.0088 30 1 0.8140 -4.9447 0.8451 31 1 0.6470 -4.8563 -0.9247 32 1 1.6896 -6.9885 -0.3242 33 1 2.8923 -5.9629 -1.1429 34 1 3.4916 -8.1998 0.8039 35 1 4.6939 -7.1737 -0.0144 36 1 6.7046 -9.8515 1.5181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815183843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:31 Heat of formation + Delta-G solvation = -156.935998 kcal Electronic energy + Delta-G solvation = -21173.705534 eV Core-core repulsion = 17537.646918 eV Total energy + Delta-G solvation = -3636.058616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.03542 -40.73201 -38.94017 -37.06311 -36.09977 -32.80535 -32.56512 -31.96046 -30.02186 -27.21272 -26.84998 -24.65534 -22.81106 -22.34616 -21.73047 -20.95583 -18.38510 -17.41776 -16.62792 -16.48692 -16.32957 -15.99309 -15.77715 -15.52375 -15.33881 -14.65872 -14.35520 -14.12621 -13.80038 -13.77047 -13.55775 -12.84270 -12.71168 -12.36387 -12.08788 -11.96584 -11.94042 -11.68289 -11.45637 -10.92031 -10.87935 -10.74310 -10.44520 -10.18152 -10.03989 -9.48214 -9.12942 -8.89983 -8.83394 -8.23288 -6.13076 -4.14780 0.34618 0.86526 2.36305 2.63546 3.28779 3.34303 3.35315 3.42015 3.94296 4.30951 4.32521 4.50368 4.61245 4.68839 4.76567 4.93081 5.17381 5.23753 5.34109 5.41507 5.43030 5.54724 5.62035 5.68721 5.81755 5.83332 5.88269 5.96594 6.01672 6.20100 6.47404 6.57827 7.03381 7.37955 7.73901 7.77540 8.10950 8.50245 8.98117 9.50256 10.98516 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.003805 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.945120 B = 7357.276198 C = 8553.450910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C -0.109 4.109 4 C -0.117 4.117 5 C 0.080 3.920 6 F -0.134 7.134 7 C -0.088 4.088 8 C -0.099 4.099 9 C 0.508 3.492 10 O -0.503 6.503 11 O -0.335 6.335 12 C 0.076 3.924 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 19.869 -5.777 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.127 4.127 4 C -0.136 4.136 5 C 0.061 3.939 6 F -0.112 7.112 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.353 3.647 10 O -0.394 6.394 11 O -0.251 6.251 12 C 0.002 3.998 13 C -0.017 4.017 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.175 0.825 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.464 19.775 -5.626 22.633 hybrid contribution 0.898 -0.462 0.522 1.137 sum -8.566 19.313 -5.104 21.735 Atomic orbital electron populations 1.21126 0.89374 1.03383 1.04007 1.20115 0.97362 0.91046 0.94625 1.20853 0.92972 0.97799 1.01062 1.21410 0.94975 0.97438 0.99754 1.17536 0.77420 0.94158 1.04764 1.91546 1.28365 1.97329 1.93981 1.21615 0.93743 0.98743 0.96617 1.18815 0.92520 0.90758 1.07941 1.20968 0.85786 0.84730 0.73207 1.90772 1.14808 1.87876 1.45956 1.86646 1.41445 1.14579 1.82428 1.23268 0.93317 0.80215 1.02958 1.22333 0.93468 0.94152 0.91738 1.87919 1.51227 1.52779 1.39175 1.20248 0.86805 0.83206 0.97747 1.21087 1.17531 1.12280 1.04405 0.91448 1.24945 0.97125 0.95042 0.97341 1.69964 1.34309 1.15079 1.34432 0.86284 0.79769 0.78080 0.82401 1.19450 1.20818 1.20782 0.90189 0.91884 0.88666 0.84078 0.84100 0.82472 0.90271 0.90216 0.91797 0.93141 0.97579 0.97468 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.73 36.01 0.31 -0.83 16 2 C -0.03 -0.32 5.91 -104.21 -0.62 -0.94 16 3 C -0.11 -0.90 9.66 -39.65 -0.38 -1.28 16 4 C -0.12 -1.03 10.02 -39.42 -0.39 -1.43 16 5 C 0.08 0.93 7.29 -39.47 -0.29 0.64 16 6 F -0.13 -1.69 17.26 2.25 0.04 -1.65 16 7 C -0.09 -1.13 9.59 -39.09 -0.38 -1.51 16 8 C -0.10 -1.28 5.87 -104.99 -0.62 -1.89 16 9 C 0.51 7.58 7.83 34.61 0.27 7.85 16 10 O -0.50 -7.78 13.13 -19.24 -0.25 -8.03 16 11 O -0.34 -5.54 9.46 -43.32 -0.41 -5.95 16 12 C 0.08 1.17 5.85 37.16 0.22 1.39 16 13 C 0.06 1.09 6.33 37.16 0.24 1.33 16 14 O -0.39 -9.42 10.30 -38.80 -0.40 -9.82 16 15 C 0.19 5.29 5.69 36.01 0.20 5.50 16 16 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 17 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.42 8.04 -51.93 -0.42 0.01 16 26 H 0.09 1.05 5.86 -51.93 -0.30 0.75 16 27 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.16 2.15 7.63 -52.49 -0.40 1.75 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -32.55 322.71 -6.77 -39.32 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.47 Total: -4.36 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.85 Total: -5.17 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.06 Total: -23.80 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.55 -6.77 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815183843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.617 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds