Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38476 * 119.88900 * 2 1 4 4 C 1.38200 * 120.35135 * 180.28281 * 3 2 1 5 5 C 1.38322 * 120.11938 * 359.43820 * 4 3 2 6 6 F 1.35103 * 120.10939 * 180.26028 * 5 4 3 7 7 C 1.39871 * 119.77489 * 0.28039 * 5 4 3 8 8 C 1.47565 * 120.17224 * 180.02562 * 7 5 4 9 9 O 1.21490 * 120.00030 * 0.02562 * 8 7 5 10 10 O 1.34738 * 120.00022 * 180.02562 * 8 7 5 11 11 C 1.45199 * 117.00073 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46882 * 179.97438 * 11 10 8 13 13 O 1.42893 * 109.47036 * 64.99935 * 12 11 10 14 14 C 1.42899 * 113.99919 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47397 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00392 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99456 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00189 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47119 * 60.00266 * 19 17 15 21 21 H 1.48500 * 109.47175 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47270 * 300.00294 * 19 17 15 23 23 C 1.37840 * 119.88643 * 179.72204 * 2 1 3 24 24 H 1.08999 * 109.47258 * 270.27552 * 1 2 3 25 25 H 1.09001 * 109.46788 * 30.27771 * 1 2 3 26 26 H 1.08995 * 109.46958 * 150.27480 * 1 2 3 27 27 H 1.08001 * 119.82575 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94282 * 179.72371 * 4 3 2 29 29 H 1.09000 * 109.46696 * 300.00169 * 11 10 8 30 30 H 1.08997 * 109.47123 * 59.99698 * 11 10 8 31 31 H 1.08997 * 109.46418 * 184.99669 * 12 11 10 32 32 H 1.09000 * 109.46729 * 304.99781 * 12 11 10 33 33 H 1.08994 * 109.47282 * 300.00150 * 14 13 12 34 34 H 1.08997 * 109.46996 * 60.00115 * 14 13 12 35 35 H 0.97001 * 119.99635 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.06104 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2006 0.0000 4 6 3.5790 1.2117 -0.0059 5 6 4.2828 0.0210 -0.0001 6 9 5.6337 0.0321 -0.0005 7 6 3.5910 -1.1947 0.0058 8 6 4.3330 -2.4702 0.0126 9 8 5.5479 -2.4663 0.0135 10 8 3.6631 -3.6393 0.0177 11 6 4.4578 -4.8544 0.0248 12 6 3.5297 -6.0708 0.0305 13 8 2.7891 -6.1105 -1.1908 14 6 1.8875 -7.2149 -1.2882 15 6 1.1631 -7.1573 -2.6084 16 1 1.3708 -6.3574 -3.3038 17 6 0.2360 -8.1261 -2.9291 18 7 -0.0164 -9.1004 -2.0825 19 14 -0.6613 -8.0550 -4.5658 20 1 0.3247 -8.1213 -5.6742 21 1 -1.5983 -9.2026 -4.6669 22 1 -1.4242 -6.7842 -4.6573 23 6 2.1938 -1.1951 0.0058 24 1 -0.3634 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8924 -0.5095 27 1 1.6524 2.1332 0.0004 28 1 4.1105 2.1519 -0.0104 29 1 5.0878 -4.8817 -0.8643 30 1 5.0857 -4.8727 0.9156 31 1 4.1232 -6.9801 0.1254 32 1 2.8401 -5.9975 0.8715 33 1 2.4472 -8.1478 -1.2209 34 1 1.1638 -7.1659 -0.4747 35 1 -0.6690 -9.7818 -2.3079 36 1 1.6530 -2.1299 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815206917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -161.056118 kcal Electronic energy + Delta-G solvation = -21177.859452 eV Core-core repulsion = 17541.622174 eV Total energy + Delta-G solvation = -3636.237278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.05151 -40.43620 -39.07581 -37.04436 -35.99117 -32.83263 -32.74829 -31.93425 -29.97914 -26.96955 -26.89426 -24.81901 -22.92364 -22.37638 -21.79003 -20.60369 -18.07166 -17.64278 -16.80135 -16.57223 -16.43598 -16.15723 -15.78849 -15.21497 -14.80468 -14.62322 -14.39370 -14.26713 -13.87564 -13.62740 -13.56701 -12.95996 -12.73140 -12.29035 -12.19742 -11.94746 -11.89756 -11.58679 -11.44558 -10.95664 -10.86498 -10.77874 -10.43022 -10.36902 -10.06530 -9.48031 -9.15983 -8.89252 -8.82896 -8.23190 -6.13538 -4.15388 0.35445 0.86787 2.42254 2.64427 3.30858 3.33600 3.35981 3.37533 3.90897 4.29591 4.31406 4.46671 4.56004 4.71720 4.80160 4.95583 5.19999 5.23031 5.23602 5.40200 5.44699 5.46843 5.57565 5.68795 5.82325 5.85105 5.89939 5.92922 6.05449 6.15969 6.47060 6.53404 7.03448 7.37777 7.75890 7.79010 8.10742 8.50457 8.96954 9.49440 10.97985 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003757 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.861147 B = 7451.531130 C = 8540.739275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 C -0.059 4.059 4 C -0.166 4.166 5 C 0.155 3.845 6 F -0.117 7.117 7 C -0.155 4.155 8 C 0.505 3.495 9 O -0.502 6.502 10 O -0.335 6.335 11 C 0.075 3.925 12 C 0.062 3.938 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.030 4.030 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 19.734 7.284 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.110 4.110 3 C -0.077 4.077 4 C -0.185 4.185 5 C 0.135 3.865 6 F -0.095 7.095 7 C -0.157 4.157 8 C 0.350 3.650 9 O -0.391 6.391 10 O -0.251 6.251 11 C 0.002 3.998 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.048 4.048 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.754 19.640 7.156 21.238 hybrid contribution -0.071 -0.415 -0.578 0.715 sum 3.684 19.225 6.578 20.651 Atomic orbital electron populations 1.20823 0.89807 1.03694 1.02887 1.20014 0.97241 0.92425 1.01336 1.21165 0.92969 0.98369 0.95232 1.21084 0.94949 0.96806 1.05679 1.17702 0.77401 0.92936 0.98490 1.91595 1.27889 1.97203 1.92794 1.19248 0.94449 0.89858 1.12161 1.20822 0.85988 0.84717 0.73490 1.90873 1.14407 1.88250 1.45598 1.86620 1.40938 1.14255 1.83260 1.23265 0.93417 0.80351 1.02765 1.22326 0.94666 0.94082 0.90496 1.87920 1.57019 1.51439 1.34714 1.20233 0.86944 0.83226 0.97550 1.21011 1.21668 1.10852 1.01904 0.91561 1.24941 0.96692 0.94949 0.97825 1.69952 1.34414 1.13527 1.35908 0.86386 0.79327 0.77592 0.83124 1.19995 1.21130 1.19977 1.21463 0.91543 0.99641 0.92194 0.90706 0.91181 0.90507 0.84379 0.83824 0.90311 0.90259 0.91795 0.93130 0.97605 0.97484 0.92558 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.00 36.01 0.36 -0.46 16 2 C -0.11 -1.01 5.87 -104.68 -0.61 -1.63 16 3 C -0.06 -0.46 9.69 -39.51 -0.38 -0.85 16 4 C -0.17 -1.52 10.01 -39.56 -0.40 -1.91 16 5 C 0.15 1.96 7.29 -38.94 -0.28 1.68 16 6 F -0.12 -1.70 15.55 2.25 0.04 -1.66 16 7 C -0.16 -2.15 5.88 -104.93 -0.62 -2.77 16 8 C 0.51 8.40 7.89 34.53 0.27 8.67 16 9 O -0.50 -9.32 15.13 -19.26 -0.29 -9.61 16 10 O -0.33 -5.76 9.44 -43.38 -0.41 -6.17 16 11 C 0.08 1.23 5.85 37.16 0.22 1.45 16 12 C 0.06 1.13 6.33 37.16 0.24 1.36 16 13 O -0.39 -9.43 10.30 -38.81 -0.40 -9.83 16 14 C 0.19 5.28 5.69 36.01 0.20 5.49 16 15 C -0.52 -15.13 9.43 -34.44 -0.32 -15.45 16 16 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.03 -0.36 9.26 -39.17 -0.36 -0.72 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -33.62 326.23 -6.81 -40.44 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -4.59 Total: -5.22 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.79 Total: -3.60 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -1.10 Total: -25.62 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.62 -6.81 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815206917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.621 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds