Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38470 * 119.82786 * 2 1 4 4 C 1.37835 * 120.22966 * 180.02562 * 3 2 1 5 5 C 1.39715 * 119.87076 * 359.97438 * 4 3 2 6 6 C 1.47560 * 120.17224 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34733 * 120.00156 * 0.02562 * 6 5 4 9 9 C 1.45195 * 117.00157 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 8 6 11 11 O 1.42902 * 109.47094 * 65.00004 * 10 9 8 12 12 C 1.42897 * 114.00065 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47444 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99600 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00115 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00033 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99895 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47231 * 59.99817 * 17 15 13 19 19 H 1.48498 * 109.46915 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46920 * 299.99961 * 17 15 13 21 21 C 1.39878 * 119.65669 * 359.97438 * 5 4 3 22 22 F 1.35104 * 120.11514 * 180.02562 * 21 5 4 23 23 C 1.38209 * 119.82339 * 180.25323 * 2 1 3 24 24 H 1.08997 * 109.47079 * 90.00183 * 1 2 3 25 25 H 1.09001 * 109.47078 * 209.99849 * 1 2 3 26 26 H 1.09001 * 109.47444 * 330.00272 * 1 2 3 27 27 H 1.08007 * 119.88202 * 0.02562 * 3 2 1 28 28 H 1.07993 * 120.06289 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46932 * 299.99579 * 9 8 6 30 30 H 1.09005 * 109.47323 * 59.99148 * 9 8 6 31 31 H 1.09006 * 109.47141 * 184.99377 * 10 9 8 32 32 H 1.08996 * 109.46977 * 304.99494 * 10 9 8 33 33 H 1.09004 * 109.47203 * 300.00112 * 12 11 10 34 34 H 1.09001 * 109.47016 * 59.99526 * 12 11 10 35 35 H 0.96998 * 119.99949 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.93976 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2013 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2784 0.0043 -0.0005 6 6 5.7540 0.0069 -0.0017 7 8 6.3633 -1.0442 -0.0021 8 8 6.4256 1.1749 -0.0022 9 6 7.8757 1.1014 -0.0039 10 6 8.4580 2.5163 -0.0049 11 8 8.1142 3.1737 1.2164 12 6 8.6119 4.5094 1.3176 13 6 8.1919 5.1035 2.6373 14 1 7.6040 4.5192 3.3297 15 6 8.5589 6.3924 2.9611 16 7 9.2752 7.1036 2.1181 17 14 8.0388 7.1285 4.5973 18 1 8.5900 6.3092 5.7063 19 1 8.5559 8.5166 4.7023 20 1 6.5563 7.1452 4.6837 21 6 3.5775 -1.2062 0.0006 22 9 4.2492 -2.3784 0.0011 23 6 2.1943 -1.1990 -0.0053 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6510 2.1339 0.0004 28 1 4.1085 2.1494 -0.0009 29 1 8.2136 0.5697 0.8857 30 1 8.2116 0.5699 -0.8943 31 1 9.5430 2.4626 -0.0956 32 1 8.0503 3.0763 -0.8464 33 1 9.7000 4.4975 1.2539 34 1 8.2069 5.1106 0.5035 35 1 9.5337 8.0103 2.3461 36 1 1.6505 -2.1321 -0.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -161.274605 kcal Electronic energy + Delta-G solvation = -21052.153089 eV Core-core repulsion = 17415.906337 eV Total energy + Delta-G solvation = -3636.246752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.07036 -40.41643 -39.09179 -37.03718 -35.97724 -33.32021 -32.76916 -30.93923 -30.16215 -28.04688 -26.89411 -23.61121 -23.09228 -22.41315 -21.95168 -20.89421 -18.16524 -17.29546 -16.90241 -16.56378 -16.42063 -16.20732 -15.80628 -15.21838 -14.90251 -14.58445 -14.40859 -14.26169 -13.98549 -13.64019 -13.52337 -12.97524 -12.75411 -12.47346 -12.17275 -11.98989 -11.93396 -11.59036 -11.43863 -10.95146 -10.86164 -10.77418 -10.42505 -10.36360 -10.06161 -9.30775 -9.15590 -9.00187 -8.88850 -8.22791 -6.13184 -4.15053 0.34212 0.89372 2.42168 2.66136 3.31221 3.33871 3.37061 3.37872 3.85850 4.27681 4.31299 4.43779 4.60864 4.72763 4.83874 4.86216 5.11692 5.18015 5.22385 5.23352 5.34977 5.46181 5.60278 5.67416 5.74121 5.85777 5.89462 5.93458 6.06316 6.11600 6.47442 6.54423 7.03851 7.38184 7.76356 7.80561 8.11147 8.50931 8.97338 9.49779 10.98330 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.003529 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.807366 B = 7932.588586 C = 9050.770083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.146 4.146 4 C -0.023 4.023 5 C -0.167 4.167 6 C 0.506 3.494 7 O -0.503 6.503 8 O -0.335 6.335 9 C 0.076 3.924 10 C 0.062 3.938 11 O -0.391 6.391 12 C 0.195 3.805 13 C -0.516 4.516 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.166 3.834 22 F -0.116 7.116 23 C -0.174 4.174 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.926 -13.857 -7.377 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.164 4.164 4 C -0.042 4.042 5 C -0.169 4.169 6 C 0.350 3.650 7 O -0.393 6.393 8 O -0.251 6.251 9 C 0.002 3.998 10 C -0.016 4.016 11 O -0.311 6.311 12 C 0.121 3.879 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.147 3.853 22 F -0.094 7.094 23 C -0.193 4.193 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.688 -14.091 -7.249 22.298 hybrid contribution 0.361 0.333 0.582 0.761 sum -15.327 -13.758 -6.667 21.649 Atomic orbital electron populations 1.20916 0.89976 1.03690 1.03124 1.20043 0.96779 0.92153 0.93550 1.21161 0.93859 0.98273 1.03118 1.21555 0.94192 0.97520 0.90887 1.19246 0.90571 0.93812 1.13275 1.20821 0.88273 0.82421 0.73447 1.90871 1.69958 1.32736 1.45730 1.86615 1.22753 1.32445 1.83290 1.23260 0.75316 0.98463 1.02746 1.22328 0.97769 0.90982 0.90495 1.87921 1.77566 1.30800 1.34803 1.20230 0.93515 0.76671 0.97521 1.21014 1.34149 0.98266 1.02020 0.91548 1.24944 0.95057 0.96589 0.97840 1.69946 1.37388 1.10478 1.35991 0.86385 0.79034 0.77886 0.83113 1.19993 1.21134 1.19973 1.17677 0.89821 0.80399 0.97451 1.91599 1.80429 1.44662 1.92699 1.20950 0.91367 0.99823 1.07168 0.90200 0.90900 0.90547 0.84241 0.82762 0.90328 0.90273 0.91806 0.93130 0.97611 0.97494 0.92556 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.00 36.01 0.36 -0.24 16 2 C -0.02 -0.20 5.88 -104.55 -0.62 -0.82 16 3 C -0.15 -1.31 9.67 -39.64 -0.38 -1.69 16 4 C -0.02 -0.27 9.62 -39.18 -0.38 -0.65 16 5 C -0.17 -2.31 5.88 -104.93 -0.62 -2.93 16 6 C 0.51 8.42 7.89 34.53 0.27 8.69 16 7 O -0.50 -9.38 15.13 -19.26 -0.29 -9.67 16 8 O -0.34 -5.78 9.44 -43.37 -0.41 -6.19 16 9 C 0.08 1.23 5.85 37.16 0.22 1.45 16 10 C 0.06 1.13 6.33 37.16 0.24 1.37 16 11 O -0.39 -9.45 10.30 -38.80 -0.40 -9.85 16 12 C 0.19 5.30 5.69 36.00 0.20 5.51 16 13 C -0.52 -15.18 9.43 -34.44 -0.32 -15.50 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.17 2.12 7.29 -38.94 -0.28 1.84 16 22 F -0.12 -1.69 15.55 2.25 0.04 -1.66 16 23 C -0.17 -1.64 9.66 -39.56 -0.38 -2.02 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 26 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.15 1.80 7.61 -52.49 -0.40 1.40 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -33.80 326.23 -6.81 -40.62 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -4.59 Total: -5.44 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.79 Total: -3.46 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.10 Total: -25.70 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.80 -6.81 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.658 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds