Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.91083 * 2 1 4 4 C 1.38554 * 120.27769 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95545 * 180.02562 * 4 3 2 6 6 C 1.38205 * 120.09903 * 0.02666 * 4 3 2 7 7 C 1.39588 * 119.81531 * 359.97438 * 6 4 3 8 8 C 1.47727 * 120.13339 * 179.97438 * 7 6 4 9 9 O 1.21474 * 120.00193 * 180.02562 * 8 7 6 10 10 O 1.34711 * 120.00617 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00631 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47481 * 180.02562 * 11 10 8 13 13 O 1.42900 * 109.47237 * 64.99464 * 12 11 10 14 14 C 1.42894 * 114.00244 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47368 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00253 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99958 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99680 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00021 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47291 * 89.99948 * 19 17 15 21 21 H 1.48501 * 109.47321 * 209.99825 * 19 17 15 22 22 H 1.48499 * 109.47376 * 330.00241 * 19 17 15 23 23 C 1.37923 * 119.90660 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47078 * 89.99349 * 1 2 3 25 25 H 1.08997 * 109.47437 * 209.99757 * 1 2 3 26 26 H 1.09000 * 109.46672 * 329.99918 * 1 2 3 27 27 H 1.07996 * 119.86155 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09185 * 179.72112 * 6 4 3 29 29 H 1.09001 * 109.47315 * 299.99903 * 11 10 8 30 30 H 1.08995 * 109.47108 * 59.99684 * 11 10 8 31 31 H 1.08995 * 109.47294 * 184.99820 * 12 11 10 32 32 H 1.08999 * 109.46794 * 305.00018 * 12 11 10 33 33 H 1.09009 * 109.47141 * 300.00639 * 14 13 12 34 34 H 1.09007 * 109.47189 * 60.00334 * 14 13 12 35 35 H 0.97005 * 120.00144 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.05317 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 0.0005 5 9 4.2495 2.3829 0.0011 6 6 4.2832 0.0169 0.0005 7 6 3.5912 -1.1954 0.0005 8 6 4.3331 -2.4729 -0.0001 9 8 3.7285 -3.5264 -0.0006 10 8 5.6802 -2.4695 -0.0001 11 6 6.3427 -3.7615 -0.0001 12 6 7.8590 -3.5572 0.0005 13 8 8.2546 -2.9295 1.2218 14 6 9.6598 -2.6915 1.3245 15 6 9.9623 -2.0306 2.6445 16 1 9.1616 -1.8143 3.3362 17 6 11.2615 -1.7020 2.9693 18 7 11.5254 -1.1248 4.1211 19 14 12.6465 -2.0767 1.7734 20 1 12.8433 -0.9184 0.8651 21 1 13.8988 -2.3307 2.5300 22 1 12.2987 -3.2789 0.9740 23 6 2.1947 -1.1956 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6532 2.1323 -0.0004 28 1 5.3631 0.0239 -0.0036 29 1 6.0513 -4.3193 0.8899 30 1 6.0513 -4.3193 -0.8900 31 1 8.3558 -4.5232 -0.0890 32 1 8.1407 -2.9244 -0.8410 33 1 10.1944 -3.6395 1.2621 34 1 9.9786 -2.0405 0.5103 35 1 12.4393 -0.8932 4.3496 36 1 1.6541 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = -157.350580 kcal Electronic energy + Delta-G solvation = -20950.388780 eV Core-core repulsion = 17314.312186 eV Total energy + Delta-G solvation = -3636.076594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.07297 -40.63728 -39.07071 -37.22113 -36.15051 -33.34219 -32.69939 -31.19227 -30.26294 -27.69799 -27.39064 -24.98998 -22.37213 -22.19450 -21.88398 -20.83227 -18.11291 -17.45160 -16.92461 -16.57076 -16.47635 -16.35540 -15.91127 -15.81882 -15.37280 -14.84660 -14.45372 -13.98765 -13.81383 -13.68553 -13.42502 -13.17974 -12.67281 -12.53080 -12.41148 -12.09571 -11.99449 -11.76274 -11.74433 -11.20614 -10.91619 -10.72338 -10.55937 -10.50485 -9.89210 -9.34318 -9.22660 -8.98945 -8.93586 -8.53002 -6.13438 -4.12988 0.31649 0.84075 2.31507 2.56786 3.23159 3.30116 3.30690 3.34254 3.87137 4.25605 4.33156 4.41880 4.45840 4.72189 4.76845 4.89755 5.03354 5.09766 5.17549 5.21710 5.27346 5.33579 5.50944 5.64569 5.68726 5.70862 5.75918 5.88629 5.93304 6.03791 6.41351 6.48216 6.52880 6.94212 7.55341 7.68223 7.92938 8.61231 8.97904 9.45057 10.99566 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.003513 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.695766 B = 7969.571423 C = 8933.672587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.124 4.124 4 C 0.094 3.906 5 F -0.132 7.132 6 C -0.099 4.099 7 C -0.088 4.088 8 C 0.510 3.490 9 O -0.508 6.508 10 O -0.335 6.335 11 C 0.075 3.925 12 C 0.057 3.943 13 O -0.376 6.376 14 C 0.168 3.832 15 C -0.521 4.521 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.069 4.069 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.004 0.996 34 H 0.001 0.999 35 H 0.267 0.733 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.322 1.381 -12.282 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.143 4.143 4 C 0.075 3.925 5 F -0.111 7.111 6 C -0.118 4.118 7 C -0.090 4.090 8 C 0.355 3.645 9 O -0.398 6.398 10 O -0.251 6.251 11 C 0.002 3.998 12 C -0.021 4.021 13 O -0.295 6.295 14 C 0.093 3.907 15 C -0.558 4.558 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.087 4.087 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.175 0.825 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.394 1.217 -12.008 23.698 hybrid contribution 1.304 -0.111 -0.710 1.489 sum -19.090 1.106 -12.719 22.965 Atomic orbital electron populations 1.20818 0.89658 1.03569 1.02971 1.19656 0.96821 0.91555 0.99230 1.21289 0.92285 0.99599 1.01105 1.17512 0.90083 0.81389 1.03519 1.91553 1.80637 1.45012 1.93854 1.21605 1.02404 0.90120 0.97648 1.18926 0.93123 0.90550 1.06367 1.20970 0.81632 0.89039 0.72904 1.90819 1.69829 1.33029 1.46108 1.86634 1.19345 1.36046 1.83026 1.23242 0.91615 0.82002 1.02968 1.22410 0.91250 0.98048 0.90377 1.87980 1.26808 1.79897 1.34800 1.20639 0.77295 0.94799 0.97928 1.20878 0.94750 1.39141 1.01078 0.89917 1.24771 0.98230 0.94613 0.95339 1.69874 1.20356 1.41302 1.21707 0.86843 0.82022 0.79369 0.81457 1.19873 1.20750 1.19111 1.21204 0.91970 0.98989 0.96540 0.90528 0.90761 0.90939 0.84099 0.82518 0.90072 0.90043 0.91621 0.92963 0.97814 0.98151 0.92313 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.07 -0.62 5.87 -104.69 -0.61 -1.23 16 3 C -0.12 -1.12 9.67 -39.42 -0.38 -1.50 16 4 C 0.09 1.08 7.29 -39.48 -0.29 0.79 16 5 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 6 C -0.10 -1.25 9.60 -39.09 -0.38 -1.62 16 7 C -0.09 -1.13 5.87 -104.99 -0.62 -1.74 16 8 C 0.51 7.65 7.90 34.61 0.27 7.93 16 9 O -0.51 -8.23 16.14 -19.25 -0.31 -8.54 16 10 O -0.33 -5.44 9.44 -43.30 -0.41 -5.85 16 11 C 0.08 1.13 5.85 37.16 0.22 1.34 16 12 C 0.06 0.96 6.33 37.16 0.24 1.19 16 13 O -0.38 -8.70 10.30 -38.80 -0.40 -9.10 16 14 C 0.17 4.25 4.76 36.00 0.17 4.42 16 15 C -0.52 -15.52 9.99 -34.44 -0.34 -15.87 16 16 H 0.08 2.71 8.06 -52.48 -0.42 2.29 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -27.63 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.07 -0.71 9.24 -39.17 -0.36 -1.07 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.16 2.08 7.61 -52.49 -0.40 1.68 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.00 0.10 7.20 -51.92 -0.37 -0.27 16 34 H 0.00 0.02 7.57 -51.92 -0.39 -0.37 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.14 1.36 7.65 -52.49 -0.40 0.96 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -33.63 324.48 -6.44 -40.07 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.53 Total: -4.00 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.82 Total: -5.58 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.86 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.12 Total: -23.49 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.63 -6.44 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.282 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds