Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.93803 * 2 1 4 4 C 1.38434 * 120.35070 * 179.97438 * 3 2 1 5 5 C 1.37881 * 120.22080 * 0.25637 * 4 3 2 6 6 C 1.39678 * 119.87276 * 359.49173 * 5 4 3 7 7 C 1.47569 * 120.16736 * 180.25589 * 6 5 4 8 8 O 1.21488 * 119.99622 * 180.24759 * 7 6 5 9 9 O 1.34727 * 120.00145 * 0.25020 * 7 6 5 10 10 C 1.45204 * 116.99751 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47197 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.46906 * 64.99897 * 11 10 9 13 13 C 1.42906 * 114.00113 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47314 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99897 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99942 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47446 * 90.00294 * 18 16 14 20 20 H 1.48504 * 109.47147 * 210.00142 * 18 16 14 21 21 H 1.48507 * 109.47692 * 330.00010 * 18 16 14 22 22 C 1.38271 * 119.93761 * 179.97438 * 2 1 3 23 23 F 1.35104 * 120.11489 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46983 * 90.00598 * 1 2 3 25 25 H 1.09006 * 109.47443 * 210.00026 * 1 2 3 26 26 H 1.08994 * 109.47420 * 330.00222 * 1 2 3 27 27 H 1.08000 * 119.82950 * 359.94791 * 3 2 1 28 28 H 1.08002 * 119.88557 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.05798 * 179.74163 * 5 4 3 30 30 H 1.08999 * 109.47050 * 299.99837 * 10 9 7 31 31 H 1.09002 * 109.47229 * 60.00222 * 10 9 7 32 32 H 1.08998 * 109.47407 * 185.00354 * 11 10 9 33 33 H 1.09006 * 109.46783 * 305.00282 * 11 10 9 34 34 H 1.09004 * 109.46893 * 300.00402 * 13 12 11 35 35 H 1.09002 * 109.46816 * 59.99903 * 13 12 11 36 36 H 0.96993 * 119.99877 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2838 0.0216 -0.0043 6 6 3.5962 -1.1942 0.0011 7 6 4.3416 -2.4678 0.0017 8 8 3.7403 -3.5235 0.0018 9 8 5.6888 -2.4598 0.0022 10 6 6.3556 -3.7497 0.0022 11 6 7.8713 -3.5404 0.0022 12 8 8.2652 -2.9111 1.2231 13 6 9.6698 -2.6684 1.3252 14 6 9.9706 -2.0062 2.6451 15 1 9.1692 -1.7918 3.3367 16 6 11.2688 -1.6742 2.9698 17 7 11.5313 -1.0959 4.1213 18 14 12.6548 -2.0458 1.7739 19 1 12.8487 -0.8873 0.8653 20 1 13.9077 -2.2964 2.5306 21 1 12.3100 -3.2492 0.9749 22 6 2.1970 -1.1982 0.0005 23 9 1.5226 -2.3689 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6531 2.1311 -0.0009 28 1 4.1126 2.1482 0.0001 29 1 5.3637 0.0324 -0.0080 30 1 6.0657 -4.3086 0.8920 31 1 6.0664 -4.3083 -0.8880 32 1 8.3713 -4.5047 -0.0874 33 1 8.1505 -2.9067 -0.8397 34 1 10.2074 -3.6146 1.2628 35 1 9.9859 -2.0165 0.5108 36 1 12.4446 -0.8627 4.3499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815220665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = -154.754844 kcal Electronic energy + Delta-G solvation = -21169.172304 eV Core-core repulsion = 17533.208270 eV Total energy + Delta-G solvation = -3635.964034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.08698 -40.44668 -39.03556 -37.20389 -36.08223 -33.38415 -32.70926 -31.24225 -30.20933 -27.68232 -27.29313 -24.85786 -22.40318 -22.07699 -21.88893 -20.91865 -17.90891 -17.63401 -17.09757 -16.80999 -16.58444 -16.24879 -15.89814 -15.27190 -15.08476 -14.82452 -14.46808 -14.02633 -13.72358 -13.45728 -13.38250 -13.13094 -12.86125 -12.57897 -12.44465 -12.14393 -12.03374 -11.74213 -11.57157 -11.19064 -10.90247 -10.70373 -10.50844 -10.39968 -9.89663 -9.32729 -9.23082 -8.94528 -8.93575 -8.53427 -6.14325 -4.13796 0.35223 0.86260 2.41060 2.59815 3.22218 3.29467 3.30172 3.36647 3.87950 4.27697 4.32410 4.42628 4.48127 4.56955 4.79404 4.89659 5.12880 5.16019 5.16864 5.23905 5.36174 5.38270 5.57345 5.66098 5.69045 5.77693 5.84277 5.90060 5.95111 6.05263 6.44182 6.50438 6.52876 6.93949 7.54824 7.75142 7.93109 8.60867 8.97150 9.44319 10.98696 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.003353 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.521195 B = 8349.185337 C = 9065.548918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.138 4.138 3 C -0.059 4.059 4 C -0.139 4.139 5 C -0.034 4.034 6 C -0.156 4.156 7 C 0.507 3.493 8 O -0.502 6.502 9 O -0.335 6.335 10 C 0.075 3.925 11 C 0.058 3.942 12 O -0.376 6.376 13 C 0.168 3.832 14 C -0.520 4.520 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.159 3.841 23 F -0.115 7.115 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.004 0.996 35 H 0.001 0.999 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.050 3.662 -12.282 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.139 4.139 3 C -0.078 4.078 4 C -0.157 4.157 5 C -0.052 4.052 6 C -0.159 4.159 7 C 0.351 3.649 8 O -0.391 6.391 9 O -0.251 6.251 10 C 0.002 3.998 11 C -0.020 4.020 12 O -0.295 6.295 13 C 0.093 3.907 14 C -0.558 4.558 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C 0.139 3.861 23 F -0.093 7.093 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.186 3.391 -12.009 22.887 hybrid contribution 1.017 -0.601 -0.708 1.377 sum -18.169 2.789 -12.717 22.352 Atomic orbital electron populations 1.20723 0.89481 1.03670 1.03003 1.19885 0.97427 0.91387 1.05229 1.21211 0.94324 0.97101 0.95122 1.21266 0.94010 0.98741 1.01711 1.21568 1.01732 0.90098 0.91797 1.19239 0.91302 0.92969 1.12344 1.20817 0.81760 0.88890 0.73443 1.90873 1.69874 1.32769 1.45589 1.86613 1.19133 1.36009 1.83359 1.23225 0.91469 0.82165 1.02946 1.22407 0.91259 0.98003 0.90319 1.87983 1.26833 1.79802 1.34858 1.20639 0.77361 0.94776 0.97903 1.20879 0.94786 1.39043 1.01102 0.89914 1.24769 0.98226 0.94618 0.95338 1.69870 1.20407 1.41277 1.21715 0.86845 0.82032 0.79368 0.81455 1.19883 1.20758 1.19107 1.17520 0.88073 0.81725 0.98783 1.91575 1.79576 1.45375 1.92731 0.90657 0.90968 0.90634 0.84379 0.84141 0.82855 0.90142 0.90126 0.91656 0.92973 0.97828 0.98156 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.83 36.01 0.35 -0.43 16 2 C -0.14 -1.33 5.88 -104.61 -0.62 -1.94 16 3 C -0.06 -0.47 9.69 -39.51 -0.38 -0.85 16 4 C -0.14 -1.22 10.03 -39.64 -0.40 -1.61 16 5 C -0.03 -0.39 9.61 -39.17 -0.38 -0.76 16 6 C -0.16 -2.16 5.88 -104.93 -0.62 -2.77 16 7 C 0.51 8.29 7.89 34.54 0.27 8.57 16 8 O -0.50 -9.19 15.13 -19.26 -0.29 -9.48 16 9 O -0.34 -5.62 9.44 -43.35 -0.41 -6.03 16 10 C 0.08 1.18 5.85 37.16 0.22 1.39 16 11 C 0.06 0.98 6.33 37.16 0.24 1.22 16 12 O -0.38 -8.70 10.30 -38.80 -0.40 -9.10 16 13 C 0.17 4.22 4.76 36.01 0.17 4.39 16 14 C -0.52 -15.40 9.99 -34.44 -0.34 -15.74 16 15 H 0.08 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 18 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 C 0.16 2.04 7.23 -38.94 -0.28 1.76 16 23 F -0.11 -1.66 14.76 2.25 0.03 -1.63 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 35 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -34.41 321.53 -6.51 -40.92 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -4.53 Total: -4.52 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.86 Total: -4.77 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.10 Total: -24.62 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.03 Total: -1.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.41 -6.51 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815220665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.833 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds