Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37843 * 120.06284 * 2 1 4 4 C 1.38650 * 120.12563 * 179.97438 * 3 2 1 5 5 F 1.35093 * 119.87527 * 179.97438 * 4 3 2 6 6 C 1.38691 * 120.24442 * 359.74291 * 4 3 2 7 7 C 1.37799 * 120.12882 * 0.50773 * 6 4 3 8 8 C 1.39688 * 120.06604 * 179.97438 * 2 1 3 9 9 C 1.47605 * 120.11934 * 0.04264 * 8 2 1 10 10 O 1.21487 * 119.99905 * 353.74388 * 9 8 2 11 11 O 1.34723 * 119.99802 * 173.73920 * 9 8 2 12 12 C 1.45199 * 117.00228 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47594 * 180.02562 * 12 11 9 14 14 O 1.42902 * 109.46909 * 65.00093 * 13 12 11 15 15 C 1.42899 * 114.00154 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47279 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99909 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99852 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47374 * 89.99628 * 20 18 16 22 22 H 1.48503 * 109.46922 * 210.00008 * 20 18 16 23 23 H 1.48498 * 109.46759 * 329.99269 * 20 18 16 24 24 H 1.09004 * 109.46716 * 263.43209 * 1 2 3 25 25 H 1.08996 * 109.46790 * 23.43205 * 1 2 3 26 26 H 1.09001 * 109.46882 * 143.43580 * 1 2 3 27 27 H 1.07997 * 119.94054 * 359.95276 * 3 2 1 28 28 H 1.08007 * 119.93579 * 180.26080 * 6 4 3 29 29 H 1.07999 * 120.06668 * 179.76517 * 7 6 4 30 30 H 1.08997 * 109.46992 * 300.00742 * 12 11 9 31 31 H 1.09001 * 109.46536 * 60.00117 * 12 11 9 32 32 H 1.09000 * 109.47406 * 185.00421 * 13 12 11 33 33 H 1.09003 * 109.47134 * 305.00525 * 13 12 11 34 34 H 1.09002 * 109.47586 * 300.00472 * 15 14 13 35 35 H 1.09003 * 109.47050 * 60.00458 * 15 14 13 36 36 H 0.96994 * 119.99863 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1930 0.0000 4 6 3.5841 1.1945 0.0005 5 9 4.2557 2.3667 0.0000 6 6 4.2839 -0.0028 0.0065 7 6 3.6041 -1.2014 0.0013 8 6 2.2069 -1.2089 0.0005 9 6 1.4730 -2.4896 0.0002 10 8 0.2635 -2.4966 0.1140 11 8 2.1445 -3.6507 -0.1266 12 6 1.3581 -4.8713 -0.1181 13 6 2.2868 -6.0774 -0.2711 14 8 3.1400 -6.1695 0.8716 15 6 4.0516 -7.2692 0.8292 16 6 4.8967 -7.2695 2.0770 17 1 4.7518 -6.5065 2.8276 18 6 5.8542 -8.2445 2.2610 19 7 6.5912 -8.2451 3.3501 20 14 6.1043 -9.5645 0.9631 21 1 7.1171 -9.1056 -0.0210 22 1 6.5757 -10.8141 1.6125 23 1 4.8187 -9.8235 0.2664 24 1 -0.3633 -0.1176 1.0210 25 1 -0.3633 0.9429 -0.4087 26 1 -0.3633 -0.8254 -0.6122 27 1 1.6576 2.1283 -0.0008 28 1 5.3640 0.0042 0.0111 29 1 4.1501 -2.1332 0.0021 30 1 0.8160 -4.9477 0.8244 31 1 0.6482 -4.8517 -0.9450 32 1 1.6912 -6.9865 -0.3540 33 1 2.8935 -5.9574 -1.1687 34 1 3.4923 -8.2028 0.7694 35 1 4.6949 -7.1743 -0.0456 36 1 7.2650 -8.9307 3.4793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815222048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = -152.846757 kcal Electronic energy + Delta-G solvation = -21078.873477 eV Core-core repulsion = 17442.992184 eV Total energy + Delta-G solvation = -3635.881293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.26419 -40.73621 -38.93160 -37.21151 -36.19391 -32.97507 -32.72466 -31.51411 -30.14600 -27.77496 -27.40418 -24.31725 -22.85033 -21.99502 -21.83781 -20.99341 -18.14213 -17.49973 -17.17537 -16.82525 -16.56649 -16.37567 -15.94503 -15.42782 -14.93087 -14.78833 -14.42348 -13.86038 -13.83301 -13.70969 -13.48422 -13.02741 -12.91464 -12.59250 -12.44482 -12.29566 -12.03654 -11.76209 -11.34714 -11.17399 -10.89653 -10.69523 -10.53806 -10.18144 -9.90567 -9.28571 -9.24254 -9.04660 -8.94866 -8.54494 -6.15107 -4.14734 0.32785 0.90614 2.33968 2.63339 3.21720 3.28931 3.29426 3.35592 3.82851 4.31647 4.35416 4.41007 4.45255 4.59779 4.78798 4.95187 5.09612 5.15976 5.29129 5.33616 5.42885 5.53171 5.57851 5.65269 5.74321 5.76408 5.85041 5.91180 5.93774 6.14862 6.43659 6.51623 6.55847 6.92783 7.53826 7.73927 7.91688 8.59682 8.96120 9.43476 10.97876 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.003458 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.775493 B = 8095.538801 C = 9125.674933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.009 3.991 3 C -0.174 4.174 4 C 0.137 3.863 5 F -0.134 7.134 6 C -0.174 4.174 7 C -0.022 4.022 8 C -0.141 4.141 9 C 0.509 3.491 10 O -0.507 6.507 11 O -0.337 6.337 12 C 0.076 3.924 13 C 0.057 3.943 14 O -0.376 6.376 15 C 0.168 3.832 16 C -0.521 4.521 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.004 0.996 35 H 0.001 0.999 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 16.641 -10.584 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.009 3.991 3 C -0.193 4.193 4 C 0.117 3.883 5 F -0.112 7.112 6 C -0.193 4.193 7 C -0.040 4.040 8 C -0.142 4.142 9 C 0.355 3.645 10 O -0.398 6.398 11 O -0.253 6.253 12 C 0.002 3.998 13 C -0.021 4.021 14 O -0.295 6.295 15 C 0.093 3.907 16 C -0.559 4.559 17 H 0.101 0.899 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.174 16.655 -10.293 22.065 hybrid contribution 0.399 -0.797 -0.760 1.172 sum -9.775 15.858 -11.053 21.661 Atomic orbital electron populations 1.21169 0.89142 1.03516 1.04246 1.19849 0.97176 0.90312 0.91789 1.20935 0.92110 0.99118 1.07123 1.18015 0.90180 0.81339 0.98748 1.91525 1.80507 1.45900 1.93314 1.21183 1.01633 0.90706 1.05741 1.21504 0.92697 0.99017 0.90762 1.19067 0.93681 0.90455 1.11038 1.20963 0.85795 0.84670 0.73051 1.90772 1.14928 1.87862 1.46249 1.86628 1.41413 1.14589 1.82633 1.23206 0.93204 0.80225 1.03120 1.22409 0.93530 0.94576 0.91561 1.87979 1.50767 1.51665 1.39075 1.20635 0.87798 0.84326 0.97900 1.20877 1.17123 1.14061 1.03807 0.89919 1.24767 0.95189 0.97342 0.95614 1.69870 1.22355 1.34847 1.26169 0.86849 0.79049 0.81759 0.82072 1.19876 1.20748 1.19110 0.89892 0.91795 0.88407 0.83892 0.83633 0.82657 0.90157 0.90143 0.91702 0.92997 0.97835 0.98160 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.73 36.01 0.31 -0.87 16 2 C 0.01 0.10 5.91 -104.22 -0.62 -0.52 16 3 C -0.17 -1.65 9.64 -39.57 -0.38 -2.03 16 4 C 0.14 1.39 7.31 -39.26 -0.29 1.11 16 5 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 6 C -0.17 -1.77 10.01 -39.57 -0.40 -2.17 16 7 C -0.02 -0.25 9.61 -39.19 -0.38 -0.63 16 8 C -0.14 -1.76 5.87 -104.98 -0.62 -2.38 16 9 C 0.51 7.35 7.82 34.55 0.27 7.62 16 10 O -0.51 -7.68 13.13 -19.26 -0.25 -7.94 16 11 O -0.34 -5.27 9.46 -43.34 -0.41 -5.68 16 12 C 0.08 1.10 5.85 37.15 0.22 1.32 16 13 C 0.06 0.94 6.33 37.15 0.24 1.17 16 14 O -0.38 -8.53 10.30 -38.80 -0.40 -8.93 16 15 C 0.17 4.18 4.76 36.01 0.17 4.35 16 16 C -0.52 -15.30 9.99 -34.44 -0.34 -15.64 16 17 H 0.08 2.67 8.06 -52.48 -0.42 2.25 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.32 13.96 55.43 0.77 -26.54 16 20 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.45 8.04 -51.93 -0.42 0.04 16 26 H 0.10 1.07 5.85 -51.93 -0.30 0.77 16 27 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 29 H 0.16 1.81 7.62 -52.49 -0.40 1.41 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 35 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -32.45 319.10 -6.45 -38.90 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.44 Total: -2.93 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.91 Total: -6.65 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.06 Total: -22.54 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.45 -6.45 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815222048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.944 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds